Locus 1457

Sequence ID 2R_DroMel_CAF1
Location 5,563,571 – 5,563,672
Length 101
Max. P 0.585283
window2488

overview

Window 8

Location 5,563,571 – 5,563,672
Length 101
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 76.57
Mean single sequence MFE -32.38
Consensus MFE -22.15
Energy contribution -22.77
Covariance contribution 0.61
Combinations/Pair 1.17
Mean z-score -1.07
Structure conservation index 0.68
SVM decision value 0.10
SVM RNA-class probability 0.585283
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5563571 101 + 20766785
GCCGCCUGUUGCUGGCGCGCUGUUAUGUGUGGAUUCUCCUUACCGUGACACUUGACCUCGCGGGAGGUGAAGCUGUAACCUUGGGCCAAGGCCAGCAGGCC
...(((((((((((((.((..(((((....((.(((.((((.((((((.........)))))))))).))).)))))))..)).)))..)).)))))))). ( -39.60)
>DroPse_CAF1 585 80 + 1
UCAGCCUGUUGCUGCC---------------------UCUUACCGUGGCACUUGACUUCCUUCGAGGUGAAACUGUAACCUUGCGCCAGCACCACCAGGCA
...(((((.(((((((---------------------..((((.((..(((((((......)).)))))..)).))))....).).)))))....))))). ( -23.60)
>DroSec_CAF1 2152 101 + 1
GCCGCCUGUUGCUGACGCGCUGUUAUGUGUGUAUUCUCCUUACCGUGACACUUGACCUCGCGAGAGGUGAAGCUGUAACCUUGGGCCAAGGCCAGCAGGCC
...((((((((...((((((......)))))).....((((.(((..((((((.(((((....))))).))).))).....)))...)))).)))))))). ( -41.60)
>DroEre_CAF1 718 95 + 1
GCCGCCUGUUGCUGAC------UUAUGUGUGCGUUCUUCUUACCAUGACACUUGACCUCGCGGGAGGUGAAGCUGUAGGCUUGGGCCAAGGCCAGUAGGCC
((((((((..(((...------(((((.(((.(.....).))))))))....(.(((((....))))).))))..)))))...(((....)))....))). ( -32.60)
>DroYak_CAF1 660 95 + 1
GCUGCCUGUUGCUGAC------UUAUGUGUGCGUUCUCCUUACCGUGACACUUGACCUCGCGGGAGGUGAAGCUGUAACCUUGGGCCAAGGCCAGCAGGCC
...((((((((((..(------(((.((..((.(((.((((.((((((.........)))))))))).)))))....))..))))....)).)))))))). ( -33.30)
>DroPer_CAF1 585 80 + 1
UCAGCCUGUUGCUGCC---------------------UCUUACCGUGGCACUUGACUUCCUUCGAGGUGAAACUGUAACCUUGCGCCAGCACCACCAGGCA
...(((((.(((((((---------------------..((((.((..(((((((......)).)))))..)).))))....).).)))))....))))). ( -23.60)
>consensus
GCCGCCUGUUGCUGAC______UUAUGUGUG__UUCUCCUUACCGUGACACUUGACCUCGCGGGAGGUGAAGCUGUAACCUUGGGCCAAGGCCAGCAGGCC
...((((((((...............................(((..((((((.(((((....))))).))).))).....)))((....)))))))))). (-22.15 = -22.77 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:21 2006