Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,561,734 – 5,561,827 |
Length | 93 |
Max. P | 0.638619 |
Location | 5,561,734 – 5,561,827 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 90.65 |
Mean single sequence MFE | -21.37 |
Consensus MFE | -20.23 |
Energy contribution | -19.57 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.15 |
Mean z-score | -1.43 |
Structure conservation index | 0.95 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5561734 93 + 20766785 AUUCGGUUUGCAUUUUAAUAUAAAUAUUCACUUUUCAGAUGUAGCGUUAUCUGCUGAGUUGGCCGGCAGGCCAUUACAGUGUGUUACAGCUUA .....((.((((((.((((..........((((..((((((......))))))..)))).((((....)))))))).))))))..))...... ( -22.10) >DroSec_CAF1 363 92 + 1 AUUUGGUUUGCAUUUUAAUA-AACUAUUCACUUUUCAGAUGUAGCUUUAUCUGCUAAGUUGGCCGGUAGGCCAUAACAGUGUGUUACAGCUUA .........((....(((((-.(((....((((..((((((......))))))..))))(((((....)))))....))).)))))..))... ( -21.40) >DroSim_CAF1 366 92 + 1 AUUUUCCUUGCAUUUUAAUA-AACUAUUCACUUUUCAGAUGUAGCGUCAUCUGCUGAGUUGGUCGUCAGGCCAUAACAGUGUGUUACAGCUUA .........((....(((((-.(((....((((..((((((......))))))..))))(((((....)))))....))).)))))..))... ( -20.60) >consensus AUUUGGUUUGCAUUUUAAUA_AACUAUUCACUUUUCAGAUGUAGCGUUAUCUGCUGAGUUGGCCGGCAGGCCAUAACAGUGUGUUACAGCUUA .........(((((...............((((..((((((......))))))..))))(((((....)))))....)))))........... (-20.23 = -19.57 + -0.66)
Location | 5,561,734 – 5,561,827 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 90.65 |
Mean single sequence MFE | -19.77 |
Consensus MFE | -16.22 |
Energy contribution | -16.67 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -2.06 |
Structure conservation index | 0.82 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5561734 93 - 20766785 UAAGCUGUAACACACUGUAAUGGCCUGCCGGCCAACUCAGCAGAUAACGCUACAUCUGAAAAGUGAAUAUUUAUAUUAAAAUGCAAACCGAAU .....((((.(((.(((...(((((....)))))...)))(((((........)))))....)))((((....))))....))))........ ( -18.50) >DroSec_CAF1 363 92 - 1 UAAGCUGUAACACACUGUUAUGGCCUACCGGCCAACUUAGCAGAUAAAGCUACAUCUGAAAAGUGAAUAGUU-UAUUAAAAUGCAAACCAAAU ((((((((............(((((....)))))((((..(((((........)))))..))))..))))))-)).................. ( -21.70) >DroSim_CAF1 366 92 - 1 UAAGCUGUAACACACUGUUAUGGCCUGACGACCAACUCAGCAGAUGACGCUACAUCUGAAAAGUGAAUAGUU-UAUUAAAAUGCAAGGAAAAU ((((((((..(((.(((...(((........)))...)))((((((......))))))....))).))))))-)).................. ( -19.10) >consensus UAAGCUGUAACACACUGUUAUGGCCUGCCGGCCAACUCAGCAGAUAACGCUACAUCUGAAAAGUGAAUAGUU_UAUUAAAAUGCAAACCAAAU ..((((((..(((.(((...(((((....)))))...)))(((((........)))))....))).))))))..................... (-16.22 = -16.67 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:20 2006