Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,560,422 – 5,560,525 |
Length | 103 |
Max. P | 0.680889 |
Location | 5,560,422 – 5,560,525 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 81.07 |
Mean single sequence MFE | -38.75 |
Consensus MFE | -24.55 |
Energy contribution | -25.30 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.18 |
Mean z-score | -1.85 |
Structure conservation index | 0.63 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.680889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5560422 103 + 20766785 ACGCAAUAGAGAUGAGCGCUCGGCGUGUUUGAUGGGGCCAGCGAUGGCCCUAGUUGCCGAUAGUUUUUGACAAGA--------UAACAGAGCGCUUAGU--GUCUGUUAAGCC ..((((((((.((((((((((((((.......((((((((....))))))))..))))....(((.((.....))--------.))).))))))))).)--.))))))..)). ( -41.70) >DroSim_CAF1 11837 111 + 1 ACGCAAUAGAGAUGGGCGCUCGGCGUGUUCGGUGGGGCCAGCGAUGGCCCUAUUAGCCGAUAGUUUUUGACAAGAUACUCGGAUAACAGAGCGCAUAGU--GUCUGUUAAGCC ..((((((((.((..(((((((((......((((((((((....)))))))))).)))....((((((((........))))).))).))))))...))--.))))))..)). ( -43.60) >DroEre_CAF1 11928 110 + 1 ACGCAAUAGAGAUGGGCGGUC---GUGUUCUGUGAGGCCAGCGAUGGCUCUGUCAGCCGAUACUUUUUGACAAUAUACUCCGAUACCAAGGCGCUGAGUGUGUCUGUUAAGUU ..........(((((((.(((---((...((....))...))))).)).)))))...........(((((((((((((((.(...(....)..).)))))))).))))))).. ( -28.50) >DroYak_CAF1 14376 113 + 1 ACGCAAUAGAGAUGGGCGCUCGGUGUGUUCUGUGAGGCCAGCGAUGGCUCUGGUAACCGAUAGUUUUUGACAAGAUACUUGUGUACCAGAGCGCUAACUGUCUCUGUUAAGCC ..(((((((((((((.((((.(((.(........).)))))))...(((((((((..(((......)))(((((...))))).))))))))).....)))))))))))..)). ( -41.20) >consensus ACGCAAUAGAGAUGGGCGCUCGGCGUGUUCGGUGAGGCCAGCGAUGGCCCUAGUAGCCGAUAGUUUUUGACAAGAUACUCGGAUAACAGAGCGCUUAGU__GUCUGUUAAGCC ..((((((((..(((((((((...........((((((((....)))))))).....(((......)))...................))))))))).....))))))..)). (-24.55 = -25.30 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:18 2006