Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,558,396 – 5,558,496 |
Length | 100 |
Max. P | 0.513197 |
Location | 5,558,396 – 5,558,496 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 84.68 |
Mean single sequence MFE | -25.44 |
Consensus MFE | -17.64 |
Energy contribution | -18.44 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.69 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513197 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5558396 100 - 20766785 GUGGAAUCGCCCCAUGUUUAAGGCACCU---ACAUAUCCAUAUAUUACUUGGAUAGUACAACGAUGUGCUCAAUAGCAACGUGCGAGGCCUUAAUGGCCAAAG ......((((....((((...(((((.(---((.((((((.........))))))))).......)))))....))))....))))((((.....)))).... ( -26.40) >DroSec_CAF1 11294 100 - 1 GUGGGAUCGCCCCAUGCUUAAGGCACCU---ACAUAUCCAUAAAGUACUUGGAUAGUACAACGAUGUGCUCAAUAGCAACGUACGAGGCCUUAAUGGCCAAAG (((((.....)))))(((((((((...(---((.((((((.........)))))))))...(((((((((....))).)))).))..))))))..)))..... ( -29.40) >DroSim_CAF1 9787 103 - 1 GUGGGAUCGCCCCAUGUUUAAGGCACCUACUACAUAUCCAUAUAGUACUUGGAUAGUACAACGAUGUGCUCAAUAGCAACGCGCGAGGCCUUAAUGGCCAAAG (((((...(((..........))).)))))(((.((((((.........)))))))))...((...((((....))))...))...((((.....)))).... ( -28.20) >DroEre_CAF1 9932 84 - 1 GUGGAAUCGC----------------AU---ACAUAUCCAUAUAGUACAUGGAUAGUAAAAAGAUGUGCUCAAUAGCAACGUGCGAGGCCUUUAUGGCCAAAG ......((((----------------.(---((.(((((((.......)))))))))).....(((((((....))).))))))))((((.....)))).... ( -26.10) >DroYak_CAF1 12411 100 - 1 GUGGAAUCGCCCCAUGUUAAAGUCACCU---ACAUAUCCAUAUAGUACUUGGAUAGUAAAAAGAUCUGCUCAAUAAAAACAUGCGAGCCCUUAUUGGCCAAAG .(((....((.(((((((.........(---((.((((((.........)))))))))....((.....))......)))))).).))((.....)))))... ( -17.10) >consensus GUGGAAUCGCCCCAUGUUUAAGGCACCU___ACAUAUCCAUAUAGUACUUGGAUAGUACAACGAUGUGCUCAAUAGCAACGUGCGAGGCCUUAAUGGCCAAAG ......((((........................((((((.........))))))(((((....))))).............))))((((.....)))).... (-17.64 = -18.44 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:17 2006