Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,545,612 – 5,545,732 |
Length | 120 |
Max. P | 0.923845 |
Location | 5,545,612 – 5,545,732 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.58 |
Mean single sequence MFE | -40.18 |
Consensus MFE | -37.32 |
Energy contribution | -37.28 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.10 |
Mean z-score | -1.38 |
Structure conservation index | 0.93 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5545612 120 - 20766785 GAUUUGUCGCAGUGCAGCGCAUACUUGACUGCGUUGCUUGGCCUUGAUAGUCACUUCGUUUGACCUAUCGUUCGGACGCGGAACAAAGAUCUCUGUACGGGUCUCUUCCUCUAUGCGGCG .....((((((((((((((((........))))))))....((.(((((((((.......))).))))))...))..))((((...((((((......)))))).))))....)))))). ( -37.90) >DroSec_CAF1 16373 120 - 1 GAUUUGUCGCAGUGCAGCGCAUAUUUGACUGCGUUGCUUGGCCUUGAUAGUCACUUCGUUUGACCUAUCGUUCGGACGCGGAACAAAGAUCUCUGUACGGGUCUCUUCCUCUAUGCGGCG .....((((((((((((((((........))))))))....((.(((((((((.......))).))))))...))..))((((...((((((......)))))).))))....)))))). ( -37.90) >DroSim_CAF1 6892 120 - 1 GAUUUGUCGCAGUGCAGCGCAUAUUUGACUGCGUUGCUUGGCCUUGAUAGUCACUUCGUUUGACCUAUCGUUCGGACGCGGAACAAAGAUCUCUGUACGGGUCUCUUCCUCUAUGCGGCG .....((((((((((((((((........))))))))....((.(((((((((.......))).))))))...))..))((((...((((((......)))))).))))....)))))). ( -37.90) >DroEre_CAF1 15195 120 - 1 GAUUUGCCGCAGUGCAGCGCAUAGUUGAUUGCGUUGCUUGGCCCUGAUAGUCACUUCGUUUGACUUCUCGUUCUGACGUGGAACAUAGAUCUCUGUUCGGGUCUCUUCCUCGAUGCGGCG .....((((((..((((((((........))))))))..(((((.(((((...((..((((.((.((.......)).)).))))..))....))))).)))))..........)))))). ( -45.00) >DroYak_CAF1 6935 120 - 1 AAUUUGCCGAAGUGCAGCGCAUACUUGACUGCGUUGCUUGGCCCUGAUGGUCACUUCGUUUGACUUCUCGUUCUGACGAGGAACAUAGAUCUCUGUUCGGGUCUCUUCCUCUAUGCGGCG .....((((((((((((((((........))))))))..((((.....)))))))))(((.(((.....)))..)))((((((...((((((......)))))).)))))).....))). ( -42.20) >consensus GAUUUGUCGCAGUGCAGCGCAUACUUGACUGCGUUGCUUGGCCUUGAUAGUCACUUCGUUUGACCUAUCGUUCGGACGCGGAACAAAGAUCUCUGUACGGGUCUCUUCCUCUAUGCGGCG .....((((((..((((((((........))))))))..(((((.((((((((.......)))).))))((((.......))))..............)))))..........)))))). (-37.32 = -37.28 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:14 2006