| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,534,158 – 5,534,254 |
| Length | 96 |
| Max. P | 0.851821 |
| Location | 5,534,158 – 5,534,254 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 87.24 |
| Mean single sequence MFE | -25.93 |
| Consensus MFE | -23.39 |
| Energy contribution | -23.83 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.851821 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5534158 96 - 20766785 GACUUCAAUGCGUAUUCGAUUCAAUGGCCCGGGGCCACCACCCUUGAAUGGCCCU-UAUUCCGCCACCAUGGCCUCGGGCCCACUAGCACCCACUCC ........((((....)........((((((((((((.((....))..((((...-......))))...)))))))))))).....)))........ ( -30.60) >DroSim_CAF1 34534 95 - 1 GACUUCAAUGCGUAUUCGAUUCUAUGGCCCGGGGCCACCACCCUUGAAAGGCCCUUUAUUCCGCCACCAUGGCCUCGGGCCCACUACCACCCACU-- .........................((((((((((((.((....))...(((..........)))....))))))))))))..............-- ( -29.00) >DroYak_CAF1 35343 90 - 1 GACUUCAAUGCGUAUUCGAUUCAAUGCCCCGGGGCCACCACCCUUGAAAGGCCCU-UAUUCCGCU--UAUGGCCUCCGGACUACU----CCCUCUCC ...........(((((......))))).(((((((((.((....))..((((...-......)))--).))))).))))......----........ ( -18.20) >consensus GACUUCAAUGCGUAUUCGAUUCAAUGGCCCGGGGCCACCACCCUUGAAAGGCCCU_UAUUCCGCCACCAUGGCCUCGGGCCCACUA_CACCCACUCC .........................((((((((((((.((....))...(((..........)))....))))))))))))................ (-23.39 = -23.83 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:11 2006