Locus 1449

Sequence ID 2R_DroMel_CAF1
Location 5,528,001 – 5,528,097
Length 96
Max. P 0.552975
window2477

overview

Window 7

Location 5,528,001 – 5,528,097
Length 96
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 83.53
Mean single sequence MFE -21.28
Consensus MFE -12.38
Energy contribution -12.82
Covariance contribution 0.44
Combinations/Pair 1.14
Mean z-score -2.02
Structure conservation index 0.58
SVM decision value 0.04
SVM RNA-class probability 0.552975
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5528001 96 + 20766785
UGCCGAGUGACUGAAUGCAUAUUUAAAAUAUUCAAAUCGCUCAGAAAUUCUAGCCAUUCCACGCCGAGCACCAGAAAU--CUACGGAUUGGGGUACUC
((((((((((.((((((...........))))))..))))))...........(((.(((..((...))...((....--))..))).)))))))... ( -21.50)
>DroSec_CAF1 51268 80 + 1
UGCCGAGUGACUGAAUGCAUAUUUA-AAUAUUCAAAUCGCUCAGAAAUUCUAGCCAUUCC---------------AAU--CUACGGAUUGGCGUACUC
....((((((.((((((........-..))))))..))))))..........((((.(((---------------...--....))).))))...... ( -20.90)
>DroSim_CAF1 28575 80 + 1
UGCCGAGUGACUGAAUGCAUAUUUA-AAUAUUCAAAUCGCUCAGAAAUUCUAGCCAUUCC---------------AAU--CUACGGAUUGGUGUACUC
....((((((.((((((........-..))))))..)))))).............((.((---------------(((--(....)))))).)).... ( -19.40)
>DroEre_CAF1 28356 97 + 1
UACCGAGUGACUGAAUGCAUAUUUA-AGUAUUCAAAUCGCUUAGAAAUUCUCGCCAUUCCACGCCGAGUACCAGAAAUUAUUACGGAUUCGGGUACUC
..(..(((((.(((((((.......-.)))))))..)))))..).....................(((((((.(((.((......))))).))))))) ( -23.50)
>DroYak_CAF1 29390 95 + 1
UAACGAGUGACUGAAUGCAUAUUUA-AAUAUUCAAAUCACUCAGAAAUUCACGCCAUUCCACGCCGAGUACCAGAAAU--AUACGGAUUCGGGUACUC
....((((((.((((((........-..))))))..)))))).......................(((((((.(((..--.......))).))))))) ( -21.10)
>consensus
UGCCGAGUGACUGAAUGCAUAUUUA_AAUAUUCAAAUCGCUCAGAAAUUCUAGCCAUUCCACGCCGAG_ACCAGAAAU__CUACGGAUUGGGGUACUC
((((((((((.((((((...........))))))..))))))...........(((.(((........................))).)))))))... (-12.38 = -12.82 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:10 2006