Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,527,534 – 5,527,644 |
Length | 110 |
Max. P | 0.973680 |
Location | 5,527,534 – 5,527,644 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.30 |
Mean single sequence MFE | -30.50 |
Consensus MFE | -25.08 |
Energy contribution | -24.52 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.21 |
Mean z-score | -1.91 |
Structure conservation index | 0.82 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973680 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5527534 110 + 20766785 ------AGAAUGACAUU-UGCU--UUAUUAUGCCAGCCAACAGUGUCCAACUUACGGAACCCAACCUAUACUUCCAAGUGGCAGGAAGUGAGGUUGACAAGGCGAACAAGGCUGUU-GUA ------......(((..-.(((--((.((.((((..((...(((.....)))...))....((((((.(((((((........)))))))))))))....)))))).)))))...)-)). ( -32.00) >DroSec_CAF1 50822 118 + 1 AACUCAAGAAUGGCAUUUUUCC--UUAUUAUGCCAGCAAACAGUUUCCAUCUUACGGAACUCAACCUGUACUUCCAAGUGGCAGGAAGUGAGGUUGACAAGGCGAACAAGGCUGUUGGUA ..........((((((..(...--..)..))))))((.((((((((((.......)))).(((((((.(((((((........)))))))))))))).............)))))).)). ( -34.90) >DroSim_CAF1 28130 112 + 1 ------AGAAUGGCAUUUUUCC--UUAUUAUGCCAGCAAACAGUUUCCAUCUUACGGAACUCAACCUGUACUUCCAAGUGGCAGGAAGUGAGGUUGACAAGGCGAACAAGGCUGUUGGUA ------....((((((..(...--..)..))))))((.((((((((((.......)))).(((((((.(((((((........)))))))))))))).............)))))).)). ( -34.90) >DroEre_CAF1 27908 112 + 1 AACCAA------GCAUUUACCCAAUUUUUUUUUCAACAAACAGUAUCCAACUUAUGGAACGCAGCCUGUACUUCCAAGUGGCAGGAAGUGAGGUUGACAA-GCGAACAAGGCUGUU-AUA ......------..........................((((((.((((.....))))..(((((((.(((((((........))))))))))))).)..-.........))))))-... ( -26.90) >DroYak_CAF1 28968 97 + 1 AACUAA------AAAAU----------------AUAGAAAUGGUAUCCAACUUAUGGAACUCGGCCUGUACUUCCAAGUGGCAGGAAGUGAGGUUGACAAGGCGAACAAGGCUGUU-AUA ......------.....----------------.....((((((.((((.....))))..(((((((.(((((((........)))))))))))))).............))))))-... ( -23.80) >consensus AAC__AAGAAUGGCAUUUUUCC__UUAUUAUGCCAGCAAACAGUAUCCAACUUACGGAACUCAACCUGUACUUCCAAGUGGCAGGAAGUGAGGUUGACAAGGCGAACAAGGCUGUU_GUA ...................................((.((((((.(((.......)))...((((((.(((((((........)))))))))))))..............)))))).)). (-25.08 = -24.52 + -0.56)
Location | 5,527,534 – 5,527,644 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.30 |
Mean single sequence MFE | -28.28 |
Consensus MFE | -19.78 |
Energy contribution | -20.58 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.13 |
Mean z-score | -1.44 |
Structure conservation index | 0.70 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5527534 110 - 20766785 UAC-AACAGCCUUGUUCGCCUUGUCAACCUCACUUCCUGCCACUUGGAAGUAUAGGUUGGGUUCCGUAAGUUGGACACUGUUGGCUGGCAUAAUAA--AGCA-AAUGUCAUUCU------ ..(-(((((...((((((.(((((((((((.((((((........))))))..)))))))......)))).))))))))))))..((((((.....--....-.))))))....------ ( -32.70) >DroSec_CAF1 50822 118 - 1 UACCAACAGCCUUGUUCGCCUUGUCAACCUCACUUCCUGCCACUUGGAAGUACAGGUUGAGUUCCGUAAGAUGGAAACUGUUUGCUGGCAUAAUAA--GGAAAAAUGCCAUUCUUGAGUU .........(((((((.(((...(((((((.((((((........))))))..))))))).....(((((..(....)..))))).)))..)))))--)).................... ( -32.80) >DroSim_CAF1 28130 112 - 1 UACCAACAGCCUUGUUCGCCUUGUCAACCUCACUUCCUGCCACUUGGAAGUACAGGUUGAGUUCCGUAAGAUGGAAACUGUUUGCUGGCAUAAUAA--GGAAAAAUGCCAUUCU------ .........(((((((.(((...(((((((.((((((........))))))..))))))).....(((((..(....)..))))).)))..)))))--))..............------ ( -32.80) >DroEre_CAF1 27908 112 - 1 UAU-AACAGCCUUGUUCGC-UUGUCAACCUCACUUCCUGCCACUUGGAAGUACAGGCUGCGUUCCAUAAGUUGGAUACUGUUUGUUGAAAAAAAAAUUGGGUAAAUGC------UUGGUU ...-..((((...((..((-((((.......((((((........)))))))))))).))((((((.....)))).)).....)))).......(((..(((....))------)..))) ( -25.41) >DroYak_CAF1 28968 97 - 1 UAU-AACAGCCUUGUUCGCCUUGUCAACCUCACUUCCUGCCACUUGGAAGUACAGGCCGAGUUCCAUAAGUUGGAUACCAUUUCUAU----------------AUUUU------UUAGUU ...-(((.......((((.(((((.......((((((........))))))))))).)))).((((.....))))............----------------.....------...))) ( -17.71) >consensus UAC_AACAGCCUUGUUCGCCUUGUCAACCUCACUUCCUGCCACUUGGAAGUACAGGUUGAGUUCCGUAAGUUGGAAACUGUUUGCUGGCAUAAUAA__GGAAAAAUGCCAUUCUU__GUU ......((((.............(((((((.((((((........))))))..)))))))((((((.....)))).)).....))))................................. (-19.78 = -20.58 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:09 2006