Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,527,106 – 5,527,207 |
Length | 101 |
Max. P | 0.740987 |
Location | 5,527,106 – 5,527,207 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 97.36 |
Mean single sequence MFE | -20.13 |
Consensus MFE | -19.60 |
Energy contribution | -19.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 0.97 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740987 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5527106 101 + 20766785 UAUUAUCCACCGUCCCCGCCCGACAUUUAUGCAAAUCAGAUCCAGAUCUAGAUCCGAAUCCCCUCCCCCUGGCCAAACCAACGUCACUUGGCCUGCAUAGC ...........(((.......)))..(((((((..((.((((........)))).)).............((((((...........))))))))))))). ( -20.20) >DroSec_CAF1 50327 101 + 1 UAUUAUCCACCGUCCCCGCCCGACAUUUAUGCAAAUCAGAUCCAGAUCUAGAUGCGAAUCCCCUCCCCCUGGCCAAACCAUCGCCACUUGGCCUGCAUAGC ...........(((.......)))..(((((((.(((((((....)))).))).................((((((...........))))))))))))). ( -19.80) >DroSim_CAF1 27687 101 + 1 UAUUAUCCACCGUCCCCGCCCGACAUUUAUGCAAAUCAGAUCCAGAUCUAGAUGCGAGUCCCCUCCCCCUGGCCAAACCAUCGCCACUUGGCCUGCAUAGC ...........(((.......)))..(((((((.(((((((....)))).)))..(((....))).....((((((...........))))))))))))). ( -20.40) >consensus UAUUAUCCACCGUCCCCGCCCGACAUUUAUGCAAAUCAGAUCCAGAUCUAGAUGCGAAUCCCCUCCCCCUGGCCAAACCAUCGCCACUUGGCCUGCAUAGC ...........(((.......)))..(((((((.(((((((....)))).))).................((((((...........))))))))))))). (-19.60 = -19.60 + -0.00)
Location | 5,527,106 – 5,527,207 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 97.36 |
Mean single sequence MFE | -34.47 |
Consensus MFE | -30.15 |
Energy contribution | -29.93 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.08 |
Structure conservation index | 0.87 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5527106 101 - 20766785 GCUAUGCAGGCCAAGUGACGUUGGUUUGGCCAGGGGGAGGGGAUUCGGAUCUAGAUCUGGAUCUGAUUUGCAUAAAUGUCGGGCGGGGACGGUGGAUAAUA ..(((((((((((((.........))))))).........((((((((((....))))))))))....))))))..((((.(.((....)).).))))... ( -37.00) >DroSec_CAF1 50327 101 - 1 GCUAUGCAGGCCAAGUGGCGAUGGUUUGGCCAGGGGGAGGGGAUUCGCAUCUAGAUCUGGAUCUGAUUUGCAUAAAUGUCGGGCGGGGACGGUGGAUAAUA ..(((((((((((((.........))))))).........(((((((.((....)).)))))))....))))))..((((.(.((....)).).))))... ( -30.80) >DroSim_CAF1 27687 101 - 1 GCUAUGCAGGCCAAGUGGCGAUGGUUUGGCCAGGGGGAGGGGACUCGCAUCUAGAUCUGGAUCUGAUUUGCAUAAAUGUCGGGCGGGGACGGUGGAUAAUA ..(((((((((((((.........)))))))...(.(((....))).)(((.((((....))))))).))))))..((((.(.((....)).).))))... ( -35.60) >consensus GCUAUGCAGGCCAAGUGGCGAUGGUUUGGCCAGGGGGAGGGGAUUCGCAUCUAGAUCUGGAUCUGAUUUGCAUAAAUGUCGGGCGGGGACGGUGGAUAAUA ..(((((((((((((.........))))))).....(((....)))..(((.((((....))))))).))))))..((((.(.((....)).).))))... (-30.15 = -29.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:07 2006