Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,523,133 – 5,523,229 |
Length | 96 |
Max. P | 0.814797 |
Location | 5,523,133 – 5,523,229 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 74.52 |
Mean single sequence MFE | -24.27 |
Consensus MFE | -11.51 |
Energy contribution | -15.02 |
Covariance contribution | 3.51 |
Combinations/Pair | 1.27 |
Mean z-score | -1.97 |
Structure conservation index | 0.47 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5523133 96 - 20766785 UGCCGGGCUGCCACUUUGACGCAUUGACCGGAAGAGGAAACCUUUUCACCAAGCUUGAAGAUGGCGGAAAAUUUGAA-------UCGAGAUUCGAAAGAUAAA .......(((((((((..(.((.(((....(((((((...)))))))..))))))..))).))))))....((((((-------(....)))))))....... ( -28.10) >DroSec_CAF1 46445 94 - 1 U--CGAGCUGCCACUUUGACGCAUUGACCGGAAGAGAAAACCUUUUCCCCAAGCUUGAAGCUGGCGGAAAAUUUGAA-------UCGAGAUUCGAAAGAUAAA (--(((.(((((((((..(.((.(((...(((((((.....))))))).))))))..))).))))))..........-------))))...((....)).... ( -29.10) >DroSim_CAF1 23713 94 - 1 U--CGAGCUGCCACUUUGACGCAUUGACCGGAAGAGGAAACCUUUUCCCCAAGCUUGAAGAUGGCGGAAAAUUUGAA-------UCGAGAUUCGAAAGAUAAA (--(((.(((((((((..(.((.(((...((((((((...)))))))).))))))..))).))))))..........-------))))...((....)).... ( -30.80) >DroEre_CAF1 23374 101 - 1 U--CGAGCUGCCAGUUUGACGCAUUGACCGGAAGAGGAAACCUCUUCCACAAGCUUGAAGAUGGCAGAAAAUUUGAGUUUGAAUUCGAGGCUCGAAAGAUAAA (--((((((((((.((..(.((.(((...((((((((...)))))))).))))))..))..))))).....(((((((....)))))))))))))........ ( -36.50) >DroWil_CAF1 30797 74 - 1 -----AGCUGCCACUUUGAUGCAUUGACCGGAAAGAGAUAAAUUUUGCA-GGGAAUAAAGAA--AAGAAAAUUG--------------------UAACAAAA- -----........((((..(..(((..((...((((......))))...-)).)))..)..)--))).......--------------------........- ( -5.00) >DroYak_CAF1 24451 78 - 1 U--CGAGCUGCCACUUUGACGCAUUGACCGGAAGAGGAAAUCUUUUCC----------------CAGAAAAUUUGAA-------UCGAGGUUCGAAAGAUAAA (--((((((((.........)).((((..(((((((.....)))))))----------------((((...))))..-------)))))))))))........ ( -16.10) >consensus U__CGAGCUGCCACUUUGACGCAUUGACCGGAAGAGGAAACCUUUUCCCCAAGCUUGAAGAUGGCAGAAAAUUUGAA_______UCGAGAUUCGAAAGAUAAA .......((((((((((((.((.(((...(((((((.....))))))).))))))))))).))))))........................((....)).... (-11.51 = -15.02 + 3.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:01 2006