Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,521,857 – 5,521,950 |
Length | 93 |
Max. P | 0.995810 |
Location | 5,521,857 – 5,521,950 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 96.56 |
Mean single sequence MFE | -29.31 |
Consensus MFE | -25.78 |
Energy contribution | -26.22 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -2.26 |
Structure conservation index | 0.88 |
SVM decision value | 2.62 |
SVM RNA-class probability | 0.995810 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5521857 93 - 20766785 GACACAGAAUUCCGACGAAGGAUCCUGAAAACAGGUCGGUUGGGCAACAAAAACAAACGCCAUAUGGAUUUUGUGUCAUCUGGCCUUUCGGGA ((((((((((.(((.(((..((.((((....))))))..)))(((.............)))...))))))))))))).(((((....))))). ( -28.52) >DroSec_CAF1 45021 93 - 1 GACACAGAAUUCCGACGAAGGAUCCUGAAAACAGGUCGGUUGGGCAACAAAAACAAACGCCAUAUGGAUUUUGUGUCAUCUGGCCUUUCGGGA ((((((((((.(((.(((..((.((((....))))))..)))(((.............)))...))))))))))))).(((((....))))). ( -28.52) >DroSim_CAF1 22310 93 - 1 GACACAGAAUUCCGACGAAGGAUCCCGAAAACAGGUCGGUUGGGCAACAAAAACAAACGCCAUAUGGAUUUUGUGUCAUCUGGGCUUUCGGGA ..........(((......)))((((((((....((..(((.(....)...)))..))(((.....(((.....))).....))))))))))) ( -25.40) >DroEre_CAF1 22057 92 - 1 GACACAGAAUUCCAACGAAGGAUCCUGAAAACAGGUCGGUUGGGCAACCAAAACA-ACGCCAUAUGGAUUUUGUGGCAUCUGGCCUUUCGGGA ..........(((......)))(((((((...(((((((((((....))))....-..((((((.......))))))..)))))))))))))) ( -33.70) >DroYak_CAF1 22565 92 - 1 GACACAGAAUUCCGACGAAGGAUCCUGAAAAGAGGUCGGUUGGGCAACCAAAACA-ACGCCAUAUGGAUUUUGUGUCAUCUGGCCUUUCGGGA ((((((((((.(((......((((((....)).))))((((((....))).....-..)))...))))))))))))).(((((....))))). ( -30.41) >consensus GACACAGAAUUCCGACGAAGGAUCCUGAAAACAGGUCGGUUGGGCAACAAAAACAAACGCCAUAUGGAUUUUGUGUCAUCUGGCCUUUCGGGA ((((((((((.(((.(((..((.((((....))))))..)))(((.............)))...))))))))))))).(((((....))))). (-25.78 = -26.22 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:00 2006