Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,519,956 – 5,520,050 |
Length | 94 |
Max. P | 0.983533 |
Location | 5,519,956 – 5,520,050 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 88.55 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -23.34 |
Energy contribution | -23.46 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.18 |
Mean z-score | -2.32 |
Structure conservation index | 0.82 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983533 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5519956 94 - 20766785 AGUCAGUCAAUAGUCGGCUUUUGGCCAGGCCAAUCAGUUGGGGGCACUUAAACGCCCAAUU-------GGUUAUUGAGUCGAU--AGAUAUUUCAAUUAAAUU ............((((((((.(((((((.((((....))))((((........))))..))-------)))))..))))))))--.................. ( -27.80) >DroSec_CAF1 43190 89 - 1 ---CAGUCAGUAGUCGGCUUUUGGCCAGGCCAAUCAGU-GG-AGCACUUAAACGCCCAAUU-------GGUUAUUGAGCCGAU--AGACAUUUCAAUUAAAUU ---..(((....((((((((.(((((((.........(-((-.((........))))).))-------)))))..))))))))--.))).............. ( -25.60) >DroSim_CAF1 20473 90 - 1 ---CAGUCAGUAGUCGGCUUUUGGCCAGGCCAAUCAGU-GGGGGCACUUAAACGCCCAAUU-------GGUUAUUGAGUCGAU--AGACAUUUCAAUUAAAUU ---..(((....((((((((.(((((((.(((.....)-))((((........))))..))-------)))))..))))))))--.))).............. ( -28.60) >DroEre_CAF1 20168 99 - 1 ---CAGUCAGUAGUCGGCUUUUGGCCAGGCCAAUCAGU-GGGAGCACUUAGCCGCCCAAUUGGUUAUUGGCUAUUGAGUCGAGAGAGACAUUUCAAUUAAAUU ---..(((..(..(((((((.(((((((((((((...(-(((.((.....))..))))))))))..)))))))..))))))).)..))).............. ( -33.20) >DroYak_CAF1 20674 90 - 1 ---CAGUACCUAGUCGGCUUUUGGCCAGGCCAAUCAGU-GGGGGCACUUAAACGCCCAAUU-------GGCUAUUGAGUCGAG--AUACAUUUCAAUUAAAUU ---..(((.(...(((((((.(((((((.(((.....)-))((((........))))..))-------)))))..))))))))--.))).............. ( -27.80) >consensus ___CAGUCAGUAGUCGGCUUUUGGCCAGGCCAAUCAGU_GGGGGCACUUAAACGCCCAAUU_______GGUUAUUGAGUCGAU__AGACAUUUCAAUUAAAUU .....(((....((((((((.(((((...((........))((((........))))...........)))))..))))))))...))).............. (-23.34 = -23.46 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:53 2006