Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,510,721 – 5,510,830 |
Length | 109 |
Max. P | 0.672611 |
Location | 5,510,721 – 5,510,830 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 90.09 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -22.18 |
Energy contribution | -22.10 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.21 |
Mean z-score | -2.24 |
Structure conservation index | 0.81 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.672611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5510721 109 - 20766785 GCAAGAGAAAGCUCAUUCAUUUGCGAGCGGCUUAAUUAAUUCGUGUUUGAAUGCGAAUUAGUAUUUGAUAUGGCAAUUAAUGAGUACUUGCAUAUUGAUGAGCACACAU ..........(((((((.((.((((((..(((((.((((((((((.(..(((((......)))))..))))))..)))))))))).)))))).)).)))))))...... ( -32.80) >DroSec_CAF1 35199 106 - 1 ACAAGAGA-AGCUCAUUCAUUUGCGAGCGGCUUAAUUAAUUCGUGUUUGAAUGCGAAUUAGUAUUUGAUAUGGCAAUUAAUGAGUACUUGCAUAUUGAUGAGCACAC-- ........-.(((((((.((.((((((..(((((.((((((((((.(..(((((......)))))..))))))..)))))))))).)))))).)).)))))))....-- ( -32.80) >DroSim_CAF1 12460 106 - 1 GCAAGAGA-AGCUCAUUCAUUUGCGAGCGGCUUAAUUAAUUCGUGUUUGAAUGCGAAUUAGUAUUUGAUAUGGCAAUUAAUGAGUACUUGCAUAUUGAUGAGCACAC-- ........-.(((((((.((.((((((..(((((.((((((((((.(..(((((......)))))..))))))..)))))))))).)))))).)).)))))))....-- ( -32.80) >DroEre_CAF1 12281 106 - 1 GCAAGAGA-AGCUCAUUCAUUUGCGUGAGACUUAAUUAAUUCGUGUUUGAAUGGGAAUUAGUAUUUGAUAUGGCAAUUAAUGAGUACUUGCAUAUUGAUGAGCACAC-- ........-.(((((((.((.((((....(((((((((((((.(((....))).))))))))..(((((......))))))))))...)))).)).)))))))....-- ( -25.00) >DroYak_CAF1 12450 106 - 1 GCAAGAGA-AGCUCAUUCAUUUGCGUGAGGCUUAAUUAAUUCGUGUUUGAAUGGGAAUUAGUAUUUGAUAUGGCAAUUAAUGAGUACUUGCAUAUUGAUGAGCACAC-- ........-.(((((((.((.((((....(((((((((((((.(((....))).))))))))..(((((......))))))))))...)))).)).)))))))....-- ( -25.30) >DroAna_CAF1 13038 103 - 1 ACAAGAGC-A--CCAUUCAUUUAUUUGCGGCCUAAUUAAUGUGUAUUUGAAUUGGAAUUUAUAUUUGAUAUGGCAAUUAAUAGGCAUUUACAUAUUGAUGAGCAAA--- ........-.--...........(((((......(((((((((((..((.(((((...((((((...))))))...)))))...))..)))))))))))..)))))--- ( -15.80) >consensus GCAAGAGA_AGCUCAUUCAUUUGCGAGCGGCUUAAUUAAUUCGUGUUUGAAUGCGAAUUAGUAUUUGAUAUGGCAAUUAAUGAGUACUUGCAUAUUGAUGAGCACAC__ ..........(((((((.((.((((....(((((.((((((((((.(..((((........))))..))))))..))))))))))...)))).)).)))))))...... (-22.18 = -22.10 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:49 2006