Locus 1436

Sequence ID 2R_DroMel_CAF1
Location 5,506,281 – 5,506,376
Length 95
Max. P 0.952036
window2454

overview

Window 4

Location 5,506,281 – 5,506,376
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 95.45
Mean single sequence MFE -10.92
Consensus MFE -10.44
Energy contribution -10.44
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.96
SVM decision value 1.42
SVM RNA-class probability 0.952036
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5506281 95 - 20766785
ACUGUCAUCAAGCAAAGCUCAAAAAAAUAAAAGAAUAUUUAAAAAAUCGUUGAAAUCACCGAUGACAAGCUCUAAAUGCGCAAACUUCAAAUUAA
..(((((((.(((...))).....(((((......)))))....................))))))).((.(.....).)).............. ( -11.10)
>DroSec_CAF1 30837 91 - 1
ACUGUCAUCAAGCAAAGCUCAAAAA----AAAGAAUAUUUAAAAAAUCGUUGAAAUCACCGAUGACAAGCUCUAAACGCGCAAACUUCAAAUUAA
..(((((((.(((...)))......----...................(.((....)).)))))))).((.(.....).)).............. ( -10.40)
>DroSim_CAF1 8020 90 - 1
ACUGUCAUCAAGCAAAGCUCAAAA-----AAAGAAUAUUUAAAAAAUCGUUGAAAUCACCGAUGACAAGCUCUAAACGCGCAAACUUCAAAUUAA
..(((((((.(((...))).....-----...................(.((....)).)))))))).((.(.....).)).............. ( -10.40)
>DroEre_CAF1 7922 90 - 1
ACUGUCAUCAAGCAAAGCUCAAAA-----AAAGAAUAUUUAAAAAAUCGUUGAAAUCACCGAUGACAUGCUCUAAACGCGCAAACUUCAAAUAAA
..(((((((.(((...))).....-----...................(.((....)).))))))))(((.(.....).)))............. ( -11.00)
>DroYak_CAF1 7965 90 - 1
ACUGUCAUCAAGCAAAGCUCAAAA-----AAAGGAUAUUUAAAAAAUCGUUGAAAUCACCGAUGACAAGCUCUAAACGCGCAAAUUUCAAAUUAA
..(((((((.(((...))).....-----....(((.(((((.......))))))))...))))))).((.(.....).)).............. ( -11.70)
>consensus
ACUGUCAUCAAGCAAAGCUCAAAA_____AAAGAAUAUUUAAAAAAUCGUUGAAAUCACCGAUGACAAGCUCUAAACGCGCAAACUUCAAAUUAA
..(((((((.(((...))).............................(.((....)).)))))))).((.(.....).)).............. (-10.44 = -10.44 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:48 2006