Locus 1435

Sequence ID 2R_DroMel_CAF1
Location 5,505,083 – 5,505,175
Length 92
Max. P 0.811219
window2453

overview

Window 3

Location 5,505,083 – 5,505,175
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 79.42
Mean single sequence MFE -24.60
Consensus MFE -16.87
Energy contribution -18.10
Covariance contribution 1.23
Combinations/Pair 1.38
Mean z-score -1.63
Structure conservation index 0.69
SVM decision value 0.65
SVM RNA-class probability 0.811219
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5505083 92 + 20766785
AUACCAUCCUUACUCUUGGUCGCGGAUACGUGCAGUAGGAGAAGGUUCCCAUUUGGAUUUGGGCUCGCCUAAUCCGAAACCAUUUUAAUUGG
...(((.((((.((((((.(((((....)))).).))))))))))......((((((((.(((....)))))))))))...........))) ( -28.80)
>DroSec_CAF1 29795 92 + 1
AUACCCUCCUUACUCUUGGUCGCGGAUCCGUGCAGCAGGAUAAGGUUCCCAUUUCGAUUUGGGCUCGCCUAAUCCGAAACCAUUUUAAUUGG
.......(((((.(((((.(((((....)))).).))))))))))......(((((..(((((....)))))..)))))(((.......))) ( -27.40)
>DroSim_CAF1 6963 92 + 1
AUACCCUCCUUACUCUUGGUCGCGGAUCCGUGCAGCAGGAUAAGGUUCCCAUUUGGAUUUGGGCUCGCCUAAUCCGAAACCAUUUUAAUUGG
.......(((((.(((((.(((((....)))).).))))))))))......((((((((.(((....))))))))))).(((.......))) ( -28.40)
>DroEre_CAF1 6929 92 + 1
AUACCAUCCGUAUUCUUGGUCACGGAUCCGUGCAGCAGGAUAAUGUUCUAACUUGGAUUUGGGCUUGCCUAAUCCGAAACCACUUUAAUUGG
...(((..(((..(((((.(((((....)))).).)))))..))).......(((((((.(((....))))))))))............))) ( -23.60)
>DroYak_CAF1 6657 92 + 1
AUACCAUCCUUAUUUUUGGUCACGAAUCCGUGCAGCAGGACAAUGUUCUAUCUUGGAUUCGGGCUUGCCUAAUCCAAAACCAUUUUAAUUGG
...(((...(((....((((((((....))))....(((((...)))))...(((((((.(((....)))))))))).))))...))).))) ( -20.00)
>DroAna_CAF1 5384 82 + 1
AUACGAACACUGGUCUUGGUCAAG----------GCAAGAUAGUAACCUUAUUUUGGAUUAGGCCAGACUAAUCCGGAACCACAUCAAUUGG
...(((..((((.(((((......----------.))))))))).......(((((((((((......))))))))))).........))). ( -19.40)
>consensus
AUACCAUCCUUACUCUUGGUCACGGAUCCGUGCAGCAGGAUAAGGUUCCCAUUUGGAUUUGGGCUCGCCUAAUCCGAAACCAUUUUAAUUGG
.......(((((.(((((.(((((....)))).).))))))))))......((((((.(((((....))))))))))).(((.......))) (-16.87 = -18.10 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:47 2006