Locus 1432

Sequence ID 2R_DroMel_CAF1
Location 5,500,202 – 5,500,300
Length 98
Max. P 0.763563
window2448

overview

Window 8

Location 5,500,202 – 5,500,300
Length 98
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 73.48
Mean single sequence MFE -22.01
Consensus MFE -14.58
Energy contribution -14.58
Covariance contribution 0.00
Combinations/Pair 1.21
Mean z-score -1.46
Structure conservation index 0.66
SVM decision value 0.51
SVM RNA-class probability 0.763563
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5500202 98 + 20766785
-------CCGCUCUUCGCUGCUUCCUGCGCCGCGGAAGGCGACGGCCAUCUUUAUCAGCCACCCCGACU-----CCCCAC-U---------CCUCUUCAUCGUCACCCUCAUCGUCACAA
-------..((..(((((.((.......)).)))))..))((((((...........))).....(((.-----......-.---------..........))).........))).... ( -21.27)
>DroSec_CAF1 24893 99 + 1
-------CCGCUUUUUGCAGCUUCCUGCGUCGCGGAAGGCGACGGCCAUCUUUCUCAGCCACCCCGACU-----CCCCACCU---------CCCCUUCAUCACCACCCUCGCCAUCACAA
-------((((....(((((....)))))..))))..(((((.(((...........))).....(...-----...)....---------.................)))))....... ( -21.40)
>DroSim_CAF1 2034 99 + 1
-------CUGCUUUUUGCAGCUUCCUGCGUCGCGGAAGGCGACGGCCAUCUUUCUCAGCCACCCCGACU-----CCCCACCU---------CCCCUUCAUCAUCACCCUCGCCAUCACAA
-------((((....(((((....)))))..))))..(((((.(((...........))).....(...-----...)....---------.................)))))....... ( -19.20)
>DroEre_CAF1 1904 114 + 1
CUGCCCCUGGC--UCCGCUGCAUCCUGCGUCGCGGAAGGCGACGGCCAUCUUUAUCAGCCACCACAACUACAUCCCCCACCUUCGCCCGCCCCCCUGCAGC---ACCAUCAUU-UUAAAU
((((....(((--((((((((.....)))..))))).(((((.((..................................)).))))).))).....)))).---.........-...... ( -26.28)
>DroYak_CAF1 1596 93 + 1
----CCCCCGC--UCUGCUGCAUCCUGCGUCGCGGAAGGCGACGGCCAUCUUUACCAGCCACCCCAACG-----CCC------------CACCCCUGCAGC---GCCCUCAUU-UCGAAC
----.......--...((((((......(((((.....)))))(((...........))).........-----...------------......))))))---.........-...... ( -21.90)
>consensus
_______CCGCU_UUUGCUGCUUCCUGCGUCGCGGAAGGCGACGGCCAUCUUUAUCAGCCACCCCGACU_____CCCCACCU_________CCCCUUCAUC__CACCCUCAUC_UCACAA
........((((.(((((.((.....))...))))).))))..(((...........)))............................................................ (-14.58 = -14.58 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:42 2006