Locus 1430

Sequence ID 2R_DroMel_CAF1
Location 5,498,826 – 5,498,946
Length 120
Max. P 0.631949
window2443

overview

Window 3

Location 5,498,826 – 5,498,946
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.67
Mean single sequence MFE -27.92
Consensus MFE -26.29
Energy contribution -26.89
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.21
Structure conservation index 0.94
SVM decision value 0.20
SVM RNA-class probability 0.631949
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5498826 120 + 20766785
AAAUUUCAUAACCCUACGAGCGGCUCUUCCGCGGAAUCCCUGGCAUUAUCCUUUUUACCUCUUGCCAAUCCGUUGGCUAAAAAACGGCUUCGACUUCCGCGUAACUGCUGGACAACAAAG
................(.(((((...((.(((((((((..(((((.................)))))..(((((........)))))....)).))))))).))))))).)......... ( -29.13)
>DroSec_CAF1 23467 120 + 1
AAAUUUCAUAACCCUACGAGCGGCUCUUCCGCGGAAUCCCUGGCAUUAUCCUUUUUACCUCUUGCCAAUCCGUUGGCUAAAAAACGGCUUCGACUUCCGCGUAACUGCUGGACAACAAAG
................(.(((((...((.(((((((((..(((((.................)))))..(((((........)))))....)).))))))).))))))).)......... ( -29.13)
>DroSim_CAF1 217 120 + 1
AAAUUUCAUAACCCUACGAGCGUCUCUUCCGCGGAAUCCCUGGCAUUAUCCUUUUUACCUCUUGCCAAUCCGUUGGCUAAAAAACGGCUUCGACUUCCGCGUAACUGCUGGACAACAAAG
................(.((((.......(((((((((..(((((.................)))))..(((((........)))))....)).)))))))....)))).)......... ( -26.13)
>DroEre_CAF1 458 120 + 1
AAAUUUCAUAACCCUACGAGCUGCUAGUUCGCGGAAUCCCUGGCAUUAUCCUUUUUACCUCUUGCCAAUCCGUUGGCUAAAAAACGGCUUCGACUUCCGCGUAACUGCUGGACAACAAAG
................(.(((....(((((((((((((..(((((.................)))))..(((((........)))))....)).))))))).))))))).)......... ( -29.23)
>DroYak_CAF1 193 120 + 1
AAAUUUCAUAACCCUACGAGCGGCUCUUCCGCGGAAUCCCUAGCAUUAUCCUUUUUACCUCUUGCCAAUCCGUUGGCUAAAAAACGGCUUCGACUUCCGCGUAACUGCUGGACAAGAAAG
................(.(((((...((.(((((((((...(((.......((((((......(((((....)))))))))))...)))..)).))))))).))))))).)......... ( -26.00)
>consensus
AAAUUUCAUAACCCUACGAGCGGCUCUUCCGCGGAAUCCCUGGCAUUAUCCUUUUUACCUCUUGCCAAUCCGUUGGCUAAAAAACGGCUUCGACUUCCGCGUAACUGCUGGACAACAAAG
................(.(((((......(((((((((..(((((.................)))))..(((((........)))))....)).)))))))...))))).)......... (-26.29 = -26.89 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:37 2006