Locus 1429

Sequence ID 2R_DroMel_CAF1
Location 5,498,502 – 5,498,603
Length 101
Max. P 0.655060
window2442

overview

Window 2

Location 5,498,502 – 5,498,603
Length 101
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 80.47
Mean single sequence MFE -30.80
Consensus MFE -25.69
Energy contribution -26.03
Covariance contribution 0.34
Combinations/Pair 1.10
Mean z-score -1.29
Structure conservation index 0.83
SVM decision value 0.25
SVM RNA-class probability 0.655060
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5498502 101 - 20766785
AAAAAAACACAUCGCCGGACAAAGGGAAAUUUGCUGCCGACUUGUUGACUUUGCGGCCUUGGGAUAUCUGAAUAUC----------------UGGGUAUCCAUGGGAUGCGGAAUUC
.....((((..(((.(((.((((......))))))).)))..))))...((((((.(((..((((((((.......----------------.))))))))..))).)))))).... ( -29.50)
>DroSim_CAF1 17245 100 - 1
AAA-----AUAUCGCCGGACAAAAGGAAAUUUGCUGCCGACUUGUUGACUUUGCGGCCUUGGGAUAUCUGAAUAUA------------UGUAUGGGUAUCCAUGGGAUGCGGAAUUC
...-----...(((.(((.((((......))))))).))).........((((((.(((..(((((((((.((...------------.)).)))))))))..))).)))))).... ( -24.70)
>DroYak_CAF1 18325 113 - 1
----AAACACAUCGCCGGACAAAGGGAAAUUUGCUGCCGACUUGUUGACUUUGCAGCCUUGGGAUAUCUGGCUAUCUUGCUAUCUGGGUAUCUGGAUAUCCAUAGGAUGCGGAAUUC
----.((((..(((.(((.((((......))))))).)))..))))...((((((.(((..(((((((..(.(((((........))))).)..)))))))..))).)))))).... ( -38.20)
>consensus
AAA_AAACACAUCGCCGGACAAAGGGAAAUUUGCUGCCGACUUGUUGACUUUGCGGCCUUGGGAUAUCUGAAUAUC____________U_U_UGGGUAUCCAUGGGAUGCGGAAUUC
.....((((..(((.(((.((((......))))))).)))..))))...((((((.(((..((((((((........................))))))))..))).)))))).... (-25.69 = -26.03 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:36 2006