Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,496,807 – 5,496,900 |
Length | 93 |
Max. P | 0.939647 |
Location | 5,496,807 – 5,496,900 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 94.60 |
Mean single sequence MFE | -28.27 |
Consensus MFE | -26.38 |
Energy contribution | -27.00 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.04 |
Mean z-score | -2.00 |
Structure conservation index | 0.93 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5496807 93 + 20766785 UUGCGUGCGCUCCUGCUGUCCUUGGUGUGUCCUUUCAGCAUGCGUGUCCUUUUUAGCAUGCUAAAAAUCAAGCGAUCAAGAAUCUGCGCGAUC ...(((((((....))....((((((((....(((.(((((((............))))))).))).....)).)))))).....)))))... ( -26.20) >DroSim_CAF1 15570 93 + 1 UUGCGCGCGCUCCUGCUGUCCUUGGUGUGUCCUUUUAGCAUGCGUGUCCUUUUUAGCAUGCUAAAAAUCAAGCGAUCGACAAUCUGCGCGAUC ...(((((((....))((((..(.((.((...(((((((((((............)))))))))))..)).)).)..))))....)))))... ( -32.60) >DroEre_CAF1 15491 91 + 1 UUGCGUGCGCUCCUGCUGUCCUUGGU--GUCCUUUUAGCAUGCGUGUCCUUUUUAGCAUGCUAAAAAUCAUGCGAUCGAAUAUCUGCGCGAUC ...(((((((....))..((..(.((--((..(((((((((((............)))))))))))...)))).)..))......)))))... ( -25.80) >DroYak_CAF1 16484 91 + 1 UUGCGAGCGCUCCUGCUGUCCUUGGU--GUCCUUUUAGCAUGCGUGUCCUUUUUAGCAUGCUAAAAAUCAAGCGAUCGAAAAUCUGCGCGAUC ......((((.....(.(((((((((--....(((((((((((............))))))))))))))))).))).).......)))).... ( -28.50) >consensus UUGCGUGCGCUCCUGCUGUCCUUGGU__GUCCUUUUAGCAUGCGUGUCCUUUUUAGCAUGCUAAAAAUCAAGCGAUCGAAAAUCUGCGCGAUC ...(((((((....)).(((((((((......(((((((((((............))))))))))))))))).))).........)))))... (-26.38 = -27.00 + 0.63)
Location | 5,496,807 – 5,496,900 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 94.60 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -25.81 |
Energy contribution | -25.62 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.90 |
Structure conservation index | 0.96 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.936956 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5496807 93 - 20766785 GAUCGCGCAGAUUCUUGAUCGCUUGAUUUUUAGCAUGCUAAAAAGGACACGCAUGCUGAAAGGACACACCAAGGACAGCAGGAGCGCACGCAA ....((((....(((((.((.((((..(((((((((((............)))))))))))(....)..))))))...)))))))))...... ( -28.00) >DroSim_CAF1 15570 93 - 1 GAUCGCGCAGAUUGUCGAUCGCUUGAUUUUUAGCAUGCUAAAAAGGACACGCAUGCUAAAAGGACACACCAAGGACAGCAGGAGCGCGCGCAA ...(((((....((((...........(((((((((((............)))))))))))((.....))...))))((....)))))))... ( -29.10) >DroEre_CAF1 15491 91 - 1 GAUCGCGCAGAUAUUCGAUCGCAUGAUUUUUAGCAUGCUAAAAAGGACACGCAUGCUAAAAGGAC--ACCAAGGACAGCAGGAGCGCACGCAA ....((((.(((.....)))((.....(((((((((((............)))))))))))(..(--.....)..).))....))))...... ( -25.40) >DroYak_CAF1 16484 91 - 1 GAUCGCGCAGAUUUUCGAUCGCUUGAUUUUUAGCAUGCUAAAAAGGACACGCAUGCUAAAAGGAC--ACCAAGGACAGCAGGAGCGCUCGCAA ....((((.((((...))))(((....(((((((((((............)))))))))))(..(--.....)..))))....))))...... ( -25.10) >consensus GAUCGCGCAGAUUUUCGAUCGCUUGAUUUUUAGCAUGCUAAAAAGGACACGCAUGCUAAAAGGAC__ACCAAGGACAGCAGGAGCGCACGCAA ....((((.(((.....)))((.((..(((((((((((............)))))))))))((.....)).....))))....))))...... (-25.81 = -25.62 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:33 2006