Locus 1426

Sequence ID 2R_DroMel_CAF1
Location 5,493,642 – 5,493,733
Length 91
Max. P 0.962385
window2437

overview

Window 7

Location 5,493,642 – 5,493,733
Length 91
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 70.28
Mean single sequence MFE -20.68
Consensus MFE -1.82
Energy contribution -1.78
Covariance contribution -0.04
Combinations/Pair 1.62
Mean z-score -2.48
Structure conservation index 0.09
SVM decision value 1.54
SVM RNA-class probability 0.962385
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5493642 91 - 20766785
UAUCUUUAUUAUCAAAUCAUAAAAUGCUGCCACUUGUGUGUU--CGCAUCCCCCAAGUGAAAACACGAGACGAAACUCCGCAAAACACCAGCA--------
........................(((((...(((((((.((--(((.........))))).))))))).((......))........)))))-------- ( -18.50)
>DroEre_CAF1 12241 90 - 1
UAUCUUUAUUAUCAAAUCAUAAAAUGCUGCCACUUGUGUGCU--CGCAUCCCCCAAGCGAAAACACG-GAGUGAACUCCGCAAAACACCAGCA--------
........................(((((......((((..(--(((.........))))..))))(-(((....)))).........)))))-------- ( -23.10)
>DroWil_CAF1 14931 76 - 1
UAUCUUUAUUAUCAAAUCAUAAAAUGUUGCCACUUGGCUGCUGCAGCAUCCCCCACGCAAUGA-----GCAAAGACUC---------UCG-----------
..(((((................(((((((..(......)..))))))).......((.....-----)))))))...---------...----------- ( -10.90)
>DroYak_CAF1 13271 91 - 1
UAUCUUUAUUAUCAAAUCAUAAAAUGCUGCCACUUGUGUGCU--CGCAUCCCCCAAGUGAGAGCACGAGAGGAAACUCCGCAAAACACCAGCA--------
........................(((((....(((((((((--(.(((.......))).))))))(.(((....)))))))).....)))))-------- ( -24.90)
>DroPer_CAF1 15362 84 - 1
------UAUUAUCAAAUCAUAAAAUGUUGCCACUUGUGU-----UGCAUCCCCCAAAGGAAGA-----GCAGCCAGGCCGCAG-CCACCACGAAAGGGGUG
------...................(((((..((((.((-----(((.(((......)))...-----)))))))))..))))-)((((.(....).)))) ( -26.00)
>consensus
UAUCUUUAUUAUCAAAUCAUAAAAUGCUGCCACUUGUGUGCU__CGCAUCCCCCAAGCGAAAACACG_GAAGAAACUCCGCAAAACACCAGCA________
........................((((......((((......)))).......)))).......................................... ( -1.82 =  -1.78 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:31 2006