Locus 1424

Sequence ID 2R_DroMel_CAF1
Location 5,489,311 – 5,489,415
Length 104
Max. P 0.942428
window2434

overview

Window 4

Location 5,489,311 – 5,489,415
Length 104
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 80.93
Mean single sequence MFE -26.99
Consensus MFE -16.19
Energy contribution -16.62
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -2.53
Structure conservation index 0.60
SVM decision value 1.33
SVM RNA-class probability 0.942428
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5489311 104 - 20766785
AAAGGUUCAAUU--------------CUCGAGGUUCGGGGUUCAGGGCUAACAGCUCACAGCUCAUAGCUCAUAGCUCAAACCCUACCCACAAGCAACAACCUUGCCUAUUGUCCACC
...((..((((.--------------..((((((((.((((..((((.....((((...(((.....)))...))))....))))))))....)....)))))))...)))).))... ( -28.00)
>DroSec_CAF1 8102 97 - 1
AAAGGUUCAAUU--------------CUCGAGGUUCGGGGUUCAGGGCUAACAGCUCACAGCUCA-------UAGCUCAAACCCUACCCACAAGCAACAACCUUGCCUAUUGUCCACC
...((..((((.--------------..(((((((.((((((..((((((..(((.....)))..-------)))))).)))))).............)))))))...)))).))... ( -27.54)
>DroSim_CAF1 10021 97 - 1
AAAGGUUCAAUU--------------CUCGAGGUUCGGGGUUCAGGGCUAACAGCUCACAGCUCA-------UAGCUCAAACCCUACCCACAAGCAACAACCUUGCCUAUUGUCCACC
...((..((((.--------------..(((((((.((((((..((((((..(((.....)))..-------)))))).)))))).............)))))))...)))).))... ( -27.54)
>DroYak_CAF1 8055 106 - 1
AAAGGUUCAAUAUUGAAUUUACAAUAUUCGAAGUUCGAGGUUCGCGA-----GAUUCGAGGCUCA-------GAGCUCGAACCCUACCCACAAGCAACAACCUUGCCUAUUGUCCACC
...((((((((((((......))))))).((.(((((((.((((...-----....)))).))).-------)))))))))))......((((((((.....))))...))))..... ( -24.90)
>consensus
AAAGGUUCAAUU______________CUCGAGGUUCGGGGUUCAGGGCUAACAGCUCACAGCUCA_______UAGCUCAAACCCUACCCACAAGCAACAACCUUGCCUAUUGUCCACC
...((..((((..................(.(((..((((((..((((.....))))..((((..........))))..))))))))))....((((.....))))..)))).))... (-16.19 = -16.62 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:28 2006