| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,481,612 – 5,481,714 |
| Length | 102 |
| Max. P | 0.701413 |
| Location | 5,481,612 – 5,481,714 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 78.83 |
| Mean single sequence MFE | -26.75 |
| Consensus MFE | -11.74 |
| Energy contribution | -12.52 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.701413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5481612 102 + 20766785 ACCAGCCAAACCGAAGCCAAAUAAGGCGCUAAAAGCCAAACUGGAACAGCAGGCGGUGA----GAUAAGGCUCAAAAGCAUUUCUCAAUCAUUGGCU----AUAUUGUUA- ...((((((((((..(((......)))(((.....((.....))...)))...))))((----((....(((....)))...)))).....))))))----.........- ( -29.30) >DroPse_CAF1 1966 100 + 1 GCCAGUCAAAACCAAGCCAAGCAAAGCGCUGAAAGCCAAACUAGAAGAACAAGCGGUAAGCAAGAUUCGGUUUAUCU-------UAAAUUUUCAACA----AGAUAAUUAA (((((((........((..(((.....)))....))................((.....))..)))).)))((((((-------(...........)----)))))).... ( -13.20) >DroSec_CAF1 334 102 + 1 ACCAGCCAAACCGAAGCCAAAUAAGGCGCUAAAAGCCAAACUGGAACAGCAGGCGGUGA----GAUAAGGCUGAAAAGCAGUUCUCAAUCAUUGGCU----AUAUUGUUA- ...((((((((((..(((......)))(((.....((.....))...)))...))))((----((....(((....)))...)))).....))))))----.........- ( -32.00) >DroSim_CAF1 334 102 + 1 ACCAGCCAAACCGAAGCCAAAUAAGGCGCUAAAAGCCAAACUGGAACAGCAGGCGGUGA----GAUAAGGCUGAAAAGCAGUACUCAAUCAUUGGCU----AUAUUGUUA- ...((((((((((..(((......)))(((.....((.....))...)))...))))((----(.((..(((....)))..))))).....))))))----.........- ( -31.10) >DroEre_CAF1 350 105 + 1 CCCAGCCAAACCGAAGCCAAAUAAGGCGCUAAAAGCCAAACUGGAACAGCAGGCGGUAGGCU-GAUAAAGCUCAAAAGGGGUUCUCAAUCCCCCACU----AUAUUAUCA- ..(((((..((((..(((......)))(((.....((.....))...)))...)))).))))-).............((((........))))....----.........- ( -29.30) >DroYak_CAF1 342 106 + 1 CCCAGCCAAACCGAAGCCAAAUAAGGCGCUAAAAGCCAAACUGGAACAGCAGGCGGUGA----GAUAAAGCUCGAAGGGUGUUCUCAAUCCGCGUCUACAUAUAUUAUUA- .((((..........(((......)))((.....))....))))...((.(.(((((((----((....(((.....)))..)))))..)))).))).............- ( -25.60) >consensus ACCAGCCAAACCGAAGCCAAAUAAGGCGCUAAAAGCCAAACUGGAACAGCAGGCGGUGA____GAUAAGGCUCAAAAGCAGUUCUCAAUCAUCGGCU____AUAUUAUUA_ (((.(((........(((......)))(((.....((.....))...))).))))))...................................................... (-11.74 = -12.52 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:24 2006