Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,402,917 – 1,403,056 |
Length | 139 |
Max. P | 0.997724 |
Location | 1,402,917 – 1,403,016 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.73 |
Mean single sequence MFE | -44.22 |
Consensus MFE | -33.82 |
Energy contribution | -34.18 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.03 |
Mean z-score | -3.39 |
Structure conservation index | 0.76 |
SVM decision value | 2.84 |
SVM RNA-class probability | 0.997332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1402917 99 + 20766785 CAGCAUUUCAUCCGCUCAGCCGCUGGGCGGUACUGGUAGUGGUA---------------------CUAGUAGUGGUACUGGUACCAUUGGCUGGCUGAGAUUAGUGCAGUUGCAGCAGUU ((((...(((.((((((((...))))))))...)))((((((((---------------------((((((....))))))))))))))))))((((..(((.....)))..)))).... ( -42.60) >DroSec_CAF1 28760 99 + 1 CAGCAUUUCAUCCGCUCAGCCGCUGGGCGGUACUGGUAGUGGUG---------------------CUAGUAGUGGUACUGGUGCCACUGGCUGGCUGAGAUUAGUGCAGUUGCAGCAGUU ((((...(((.((((((((...))))))))...)))((((((..---------------------((((((....))))))..))))))))))((((..(((.....)))..)))).... ( -44.10) >DroSim_CAF1 33730 99 + 1 CAGCAUUUCAUCCGCUCAGCCGCUGGGCGGUACUGGUAGUGGUG---------------------CCAGUAGUGGUACUGGUGCCACUGGCUGGCUGAGAUUAGUGCAGUUGCAGCAGUU ((((...(((.((((((((...))))))))...)))((((((..---------------------((((((....))))))..))))))))))((((..(((.....)))..)))).... ( -46.40) >DroEre_CAF1 27572 120 + 1 CAGAAUUUUAUCCGCUCAGCCGCUGGGCGGCACUGGUAGUGGUAGUGGUAGUGGUACUAGUGGUGCCAGUAGUGGUACUGGUACCACUGGCUGGCUGAGAUUAGUGCAGUUGCAGCAGUU ...........((((((((...)))))))).((((((((..(((.((((..((((.(((((((((((((((....)))))))))))))))...))))..)))).)))..))))..)))). ( -51.30) >DroYak_CAF1 29426 90 + 1 CAGCAUUUUAUCCGCUCAGCCGCUGGGCGGUACUGGUAGUGGUA---------------------CUAGUAGUGGUUCUGCUACCACUGGCUGGCUGAGAUUAGUGCAGU---------U ..(((((.......(((((((((..(.......((((((..(.(---------------------(((....)))).)..)))))))..)).)))))))...)))))...---------. ( -36.71) >consensus CAGCAUUUCAUCCGCUCAGCCGCUGGGCGGUACUGGUAGUGGUA_____________________CUAGUAGUGGUACUGGUACCACUGGCUGGCUGAGAUUAGUGCAGUUGCAGCAGUU ..(((((...((.((.((((((.(((.((((((((.((.(((.......................))).)).))))))))...))).)))))))).))....)))))............. (-33.82 = -34.18 + 0.36)
Location | 1,402,917 – 1,403,016 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.73 |
Mean single sequence MFE | -30.15 |
Consensus MFE | -21.14 |
Energy contribution | -22.14 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.16 |
Structure conservation index | 0.70 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1402917 99 - 20766785 AACUGCUGCAACUGCACUAAUCUCAGCCAGCCAAUGGUACCAGUACCACUACUAG---------------------UACCACUACCAGUACCGCCCAGCGGCUGAGCGGAUGAAAUGCUG ..(((((((....)))......((((((......((((((.((((....)))).)---------------------)))))...........((...))))))))))))........... ( -28.40) >DroSec_CAF1 28760 99 - 1 AACUGCUGCAACUGCACUAAUCUCAGCCAGCCAGUGGCACCAGUACCACUACUAG---------------------CACCACUACCAGUACCGCCCAGCGGCUGAGCGGAUGAAAUGCUG ..(((((((....)))......((((((....(((((..(.((((....)))).)---------------------..))))).........((...))))))))))))........... ( -26.20) >DroSim_CAF1 33730 99 - 1 AACUGCUGCAACUGCACUAAUCUCAGCCAGCCAGUGGCACCAGUACCACUACUGG---------------------CACCACUACCAGUACCGCCCAGCGGCUGAGCGGAUGAAAUGCUG ..(((((((....)))......((((((....(((((..((((((....))))))---------------------..))))).........((...))))))))))))........... ( -32.70) >DroEre_CAF1 27572 120 - 1 AACUGCUGCAACUGCACUAAUCUCAGCCAGCCAGUGGUACCAGUACCACUACUGGCACCACUAGUACCACUACCACUACCACUACCAGUGCCGCCCAGCGGCUGAGCGGAUAAAAUUCUG ..(((((((....)))......((((((.((.(((((((....)))))))...(((((...((((...............))))...))))).....))))))))))))........... ( -37.76) >DroYak_CAF1 29426 90 - 1 A---------ACUGCACUAAUCUCAGCCAGCCAGUGGUAGCAGAACCACUACUAG---------------------UACCACUACCAGUACCGCCCAGCGGCUGAGCGGAUAAAAUGCUG .---------...(((...((((..(((((((((((((......))))))....(---------------------(((........))))........))))).))))))....))).. ( -25.70) >consensus AACUGCUGCAACUGCACUAAUCUCAGCCAGCCAGUGGUACCAGUACCACUACUAG_____________________UACCACUACCAGUACCGCCCAGCGGCUGAGCGGAUGAAAUGCUG .............(((...((((..((((((((((((((....)))))))..........................................((...))))))).))))))....))).. (-21.14 = -22.14 + 1.00)
Location | 1,402,957 – 1,403,056 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.03 |
Mean single sequence MFE | -37.52 |
Consensus MFE | -30.78 |
Energy contribution | -30.84 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -3.02 |
Structure conservation index | 0.82 |
SVM decision value | 2.92 |
SVM RNA-class probability | 0.997724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1402957 99 + 20766785 GGUA---------------------CUAGUAGUGGUACUGGUACCAUUGGCUGGCUGAGAUUAGUGCAGUUGCAGCAGUUGCAUCUGCAGUUGCCGUUGUUCUUAUUGCGGUUUCUGUUA ((((---------------------((((((....))))))))))....((..((((..(((.....)))..))))....))....((((..(((((.((....)).)))))..)))).. ( -34.30) >DroSec_CAF1 28800 99 + 1 GGUG---------------------CUAGUAGUGGUACUGGUGCCACUGGCUGGCUGAGAUUAGUGCAGUUGCAGCAGUUGCAUCUGCAGUUGCCGUUGUUCUUAUUGCGGUUUCUGUUA ...(---------------------((((((((((((....))))))).))))))..........((((.(((((...))))).))))((..(((((.((....)).)))))..)).... ( -36.80) >DroSim_CAF1 33770 99 + 1 GGUG---------------------CCAGUAGUGGUACUGGUGCCACUGGCUGGCUGAGAUUAGUGCAGUUGCAGCAGUUGCAUCUGCAGUUGCCGUUGUUCUUAUUGCGGUUUCUGUUA ...(---------------------((((((((((((....))))))).))))))..........((((.(((((...))))).))))((..(((((.((....)).)))))..)).... ( -39.10) >DroEre_CAF1 27612 120 + 1 GGUAGUGGUAGUGGUACUAGUGGUGCCAGUAGUGGUACUGGUACCACUGGCUGGCUGAGAUUAGUGCAGUUGCAGCAGUUGCAUCUGCAGUUGCCGUUGUUCUUAUUGCGGUUUCUGUUA .(((.((((..((((.(((((((((((((((....)))))))))))))))...))))..)))).)))((.(((((...))))).))((((..(((((.((....)).)))))..)))).. ( -49.50) >DroYak_CAF1 29466 90 + 1 GGUA---------------------CUAGUAGUGGUUCUGCUACCACUGGCUGGCUGAGAUUAGUGCAGU---------UGCAUCUGCAGUUGCCGUUGUUCUUAUUGCGGUUUCUGUUA .(((---------------------(((((..(((((..((((....)))).)))))..))))))))...---------.......((((..(((((.((....)).)))))..)))).. ( -27.90) >consensus GGUA_____________________CUAGUAGUGGUACUGGUACCACUGGCUGGCUGAGAUUAGUGCAGUUGCAGCAGUUGCAUCUGCAGUUGCCGUUGUUCUUAUUGCGGUUUCUGUUA .........................((((((((((((....))))))).))))).........(((((((((...)))))))))..((((..(((((.((....)).)))))..)))).. (-30.78 = -30.84 + 0.06)
Location | 1,402,957 – 1,403,056 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.03 |
Mean single sequence MFE | -25.20 |
Consensus MFE | -18.66 |
Energy contribution | -20.26 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.95 |
Structure conservation index | 0.74 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985617 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1402957 99 - 20766785 UAACAGAAACCGCAAUAAGAACAACGGCAACUGCAGAUGCAACUGCUGCAACUGCACUAAUCUCAGCCAGCCAAUGGUACCAGUACCACUACUAG---------------------UACC .........................(((...(((((.((((.....)))).)))))((......))...)))...(((((.((((....)))).)---------------------)))) ( -23.20) >DroSec_CAF1 28800 99 - 1 UAACAGAAACCGCAAUAAGAACAACGGCAACUGCAGAUGCAACUGCUGCAACUGCACUAAUCUCAGCCAGCCAGUGGCACCAGUACCACUACUAG---------------------CACC ...........((............(((...(((((.((((.....)))).)))))((......))...)))(((((........)))))....)---------------------)... ( -23.50) >DroSim_CAF1 33770 99 - 1 UAACAGAAACCGCAAUAAGAACAACGGCAACUGCAGAUGCAACUGCUGCAACUGCACUAAUCUCAGCCAGCCAGUGGCACCAGUACCACUACUGG---------------------CACC ....(((..(((............)))....(((((.((((.....)))).)))))....)))..(((((..(((((........))))).))))---------------------)... ( -28.10) >DroEre_CAF1 27612 120 - 1 UAACAGAAACCGCAAUAAGAACAACGGCAACUGCAGAUGCAACUGCUGCAACUGCACUAAUCUCAGCCAGCCAGUGGUACCAGUACCACUACUGGCACCACUAGUACCACUACCACUACC .........................((..(((((((.((((.....)))).))))..........(((((..(((((((....))))))).)))))......))).))............ ( -32.60) >DroYak_CAF1 29466 90 - 1 UAACAGAAACCGCAAUAAGAACAACGGCAACUGCAGAUGCA---------ACUGCACUAAUCUCAGCCAGCCAGUGGUAGCAGAACCACUACUAG---------------------UACC ...........((............(((..(((.((((((.---------...)))....))))))...)))((((((......))))))....)---------------------)... ( -18.60) >consensus UAACAGAAACCGCAAUAAGAACAACGGCAACUGCAGAUGCAACUGCUGCAACUGCACUAAUCUCAGCCAGCCAGUGGUACCAGUACCACUACUAG_____________________UACC .........................(((...(((((.((((.....)))).)))))((......))...)))(((((((....))))))).............................. (-18.66 = -20.26 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:23 2006