Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,479,938 – 5,480,058 |
Length | 120 |
Max. P | 0.687876 |
Location | 5,479,938 – 5,480,058 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.89 |
Mean single sequence MFE | -48.44 |
Consensus MFE | -35.47 |
Energy contribution | -37.03 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.17 |
Mean z-score | -1.68 |
Structure conservation index | 0.73 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687876 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5479938 120 + 20766785 GGGAGAUUCCGGUAGCCCGCUGAUGGCUUCGGUGGGCAGGGGUGCUGAUCAAUUUUAUUACCUAGCCGGAAUAACGUCCUACGGAGGGGGACCCUCCAGUUACGGAUAUGGGCCAGCGGU ((...((((((((.(((((((((.....)))))))))..(((((.(((......))).))))).))))))))...((((.((((((((...)))))).))...)))).....))...... ( -51.40) >DroSim_CAF1 7546 120 + 1 GGGCGAUUCCGGUAGCCCGCUGAUGGCAUCGGUGGGCAGGGGUGCUGGUCAAUUUUAUUACUUAGCCGGAAUAACCUCCUACGGAGGGGGCCCCUCCAGUUACGGAUGUGGGCCAGCGGU ..((.((((((((.((((((((((...))))))))))..(((((.(((......))).))))).))))))))..(((((...))))).(((((((((......))).).))))).))... ( -54.70) >DroEre_CAF1 6900 120 + 1 AGGCGAUUCCGGUGGACCGCUGAUGGCCUCAGUGGGAAGGGCCGAUCAUCAAUUUUAUUACCUAGCCGGAAUAACUUCCUACGGAGGGGAUGCCUCUAGUUAUGGAUGUGGGCCAGCGGU .(((.((((((((...(((((((.....)))))))..(((....................))).)))))))).((.(((.(((((((.....))))).))...))).))..)))...... ( -40.25) >DroYak_CAF1 7271 117 + 1 CGGCGAUUCCGGUGGCCCGCUGAUGCUCUCAGUGGGACGGGACGUUCAUCAAUUUUAUUACCUAGCCGGAAUAACCUCCUACGGAGGAGGUCCUCC---GUAUGGAAGUGGACCAGCGAU .((((.(((((....((((((((.....)))))))).)))))))))..................((.((....((.(((((((((((....)))))---))).))).))...)).))... ( -47.40) >consensus GGGCGAUUCCGGUAGCCCGCUGAUGGCCUCAGUGGGAAGGGGCGCUCAUCAAUUUUAUUACCUAGCCGGAAUAACCUCCUACGGAGGGGGUCCCUCCAGUUACGGAUGUGGGCCAGCGGU ..((.((((((((.(((((((((.....))))))))).(((...................))).))))))))..(((((...))))).(((((.(((......)))...))))).))... (-35.47 = -37.03 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:23 2006