Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,476,802 – 5,476,909 |
Length | 107 |
Max. P | 0.813629 |
Location | 5,476,802 – 5,476,909 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 95.05 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -19.76 |
Energy contribution | -19.52 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.58 |
Structure conservation index | 0.84 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5476802 107 - 20766785 CGAGAAUUUGCGCACUCGCAACUCUGGCCACACCGCACGUCACGGCAACGGCAAUCCUAGAACUAUCUGCCACAUCAGAUUUUUCAAACUUUGUAUACUGUUUCUCA .(((((.(((((....))))).....(((...(((.......)))....))).......(((..(((((......)))))..)))................))))). ( -22.00) >DroSec_CAF1 4382 107 - 1 CGAGAAUUUGCGCACUCGCAACUCUGGUCACACCGCAUGUCACGACAACGGCAAUCCUAGAACUAUCUGCCACAUCAGAUUUUUCAAACUUUGUAUACUGUUUCUCA .((((...(((((....))......((.....)))))......((((...((((.....(((..(((((......)))))..))).....))))....)))))))). ( -20.60) >DroSim_CAF1 4734 107 - 1 CGAGAAUUUGCGCACUCGCAACUCUGGUCACACCGCAUGUCACGGCAACGGCAAUCCUAGAACUAUCUGCCACAUCAGAUUUUUCAAACUUUGUAUACUGUUUCUCA .(((((..(((((....))......((.....))))).....((....))((((.....(((..(((((......)))))..))).....)))).......))))). ( -22.50) >DroEre_CAF1 4416 107 - 1 CGAGAAUUAGCGCAUUCGCAACUCCGGCCACACUGCACGUCACGGCAACGGCAAUCCUAGAACUAUCUGCCACAUCAGAUUUUUCAAACUUUGUGUACUAUUUCUCA .(((((.(((..(((..((.....((((......)).))...((....)))).......(((..(((((......)))))..))).......)))..))).))))). ( -26.60) >DroYak_CAF1 4491 107 - 1 CGAGAAUUGGCGCAUUCGCAACUCCGGCCACACUGCACGUCACGGCAACGGCAAUCCUAGAACUAUCUGCCACAUCAGAUUUUUCAAACUUUGUGUACUAUUUCUCA .(((((.(((..(((..((.....((((......)).))...((....)))).......(((..(((((......)))))..))).......)))..))).))))). ( -26.30) >consensus CGAGAAUUUGCGCACUCGCAACUCUGGCCACACCGCACGUCACGGCAACGGCAAUCCUAGAACUAUCUGCCACAUCAGAUUUUUCAAACUUUGUAUACUGUUUCUCA .(((((...((((....))......((.....))))......((....))((((.....(((..(((((......)))))..))).....)))).......))))). (-19.76 = -19.52 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:22 2006