| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,469,609 – 5,469,702 |
| Length | 93 |
| Max. P | 0.603988 |
| Location | 5,469,609 – 5,469,702 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 80.07 |
| Mean single sequence MFE | -15.88 |
| Consensus MFE | -9.98 |
| Energy contribution | -11.35 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5469609 93 + 20766785 AAUGGAAGGGUCAAAUAAAUACAAUUGACCUUCUAUAACUUCAAACCGAGUAUAUCACAU---GAAUUGAGAAUAUAUUCGUAGAACAUUGUAAUC .((((((((.((((..........))))))))))))..........((((((((((.((.---....)).).)))))))))............... ( -19.30) >DroSec_CAF1 57850 93 + 1 AAUGGAAGGGUCAAAUAAAUACAAUUGACCUUCUAUAACUUCAAACUGAGUGUAUCAAAU---GAAUUGAGAACAUAUUCGUAGAACAUUGUAAUC .((((((((.((((..........))))))))))))............(((((.((..((---((((((....)).)))))).)))))))...... ( -16.10) >DroSim_CAF1 58093 93 + 1 AAUGGAAGGGUCAAAAAAAUACAAUUGACCUUCUAUAACUUCAAACUGAGUAUAUCAAAU---GAAUUGAGAACAUAUUCGUAGAACAUUGUAAUC .((((((((.((((..........))))))))))))...........((((((.((((..---...))))....))))))................ ( -16.00) >DroEre_CAF1 59338 82 + 1 UAUGAAAGGGUAAAACAAAUACAGUUGACCUUUUAUAACAUUAAUCAGAGUUUAUCCAAUAAGAAAUUGAAA---CAU--GUUGAA---------A (((((((((....(((.......)))..))))))))).......((((.((((...((((.....)))))))---)..--.)))).---------. ( -12.10) >consensus AAUGGAAGGGUCAAAUAAAUACAAUUGACCUUCUAUAACUUCAAACUGAGUAUAUCAAAU___GAAUUGAGAACAUAUUCGUAGAACAUUGUAAUC .((((((((.((((..........))))))))))))..........(((((((.((((........))))....)))))))............... ( -9.98 = -11.35 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:17 2006