| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,460,123 – 5,460,220 |
| Length | 97 |
| Max. P | 0.650346 |
| Location | 5,460,123 – 5,460,220 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 88.95 |
| Mean single sequence MFE | -26.14 |
| Consensus MFE | -22.10 |
| Energy contribution | -21.94 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5460123 97 + 20766785 UGAGUGCAAAACACAAAACAGAGAUUUCAGCUCGAGCGCCUGUAUGUAUGCACUUUUUGAGUGAAAGUGUGGGUGUUCUUGGUCUAGUUCAGUGUUU ........((((((..(((.(((.......)))(((((((..(((.....(((((...)))))...)))..)))))))........)))..)))))) ( -28.10) >DroSec_CAF1 48316 96 + 1 UGAGUGCAAAACACAACACAGAGAUUUCAGCUCGAGCGCCUGUAUGUAUGCACUUUUUGAGUGAAAGUGUGGGUGUUCUUGGUCUAGUUCAGUGU-U ...(((.....)))(((((.(((.......)))(((((((..(((.....(((((...)))))...)))..))))))).............))))-) ( -27.40) >DroSim_CAF1 48576 96 + 1 UGAGUGCAAAACACAACAAAGAGAUUUCAGCUCGAGCGCCUGUAUGUAUGCACUUUUUGAGUGAAAGUGUGGGUGUUCUUGGUCUAGUUCAGUGU-U .........(((((......(((.......)))(((((((..(((.....(((((...)))))...)))..))))))).............))))-) ( -25.70) >DroEre_CAF1 49730 81 + 1 CGAGUGCAAAACAC-----AGAGAUUUCAGCUCGGGCGCCUGUAUGUAUGCACUUUUUGAGUGAAAGUGUGGGUGUUCUUGGUUUA----------- ........((((.(-----((((.......)))(((((((..(((.....(((((...)))))...)))..))))))).)))))).----------- ( -22.20) >DroYak_CAF1 49961 90 + 1 CGAGUGCAAAACAC-----AGAGAUUUCAGCUCGAGCGCCUGUAUGUAUGCACUU-UUGAGUGAAAGUGUGGGUGUUCCUGAUUUAGUUCAGUGU-U .........(((((-----.(((...((((...(((((((..(((.....((((.-...))))...)))..))))))))))).....))).))))-) ( -27.30) >consensus UGAGUGCAAAACACAA_A_AGAGAUUUCAGCUCGAGCGCCUGUAUGUAUGCACUUUUUGAGUGAAAGUGUGGGUGUUCUUGGUCUAGUUCAGUGU_U ...(((.....)))......(((.......)))(((((((..(((.....(((((...)))))...)))..)))))))................... (-22.10 = -21.94 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:16 2006