Locus 1413

Sequence ID 2R_DroMel_CAF1
Location 5,459,599 – 5,459,716
Length 117
Max. P 0.832185
window2421

overview

Window 1

Location 5,459,599 – 5,459,716
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 94.02
Mean single sequence MFE -26.59
Consensus MFE -21.70
Energy contribution -22.22
Covariance contribution 0.52
Combinations/Pair 1.12
Mean z-score -1.69
Structure conservation index 0.82
SVM decision value 0.72
SVM RNA-class probability 0.832185
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5459599 117 - 20766785
CCUAUCAUAUCACUUGAUUCAACAUAGCCGCAAGCCGCAGUGGCAACAAAGGUAAUGCCGCAAGACAACCGCAAAUCCCAUUUCCUGUGACAUUUUCCCUGCGAACUGCAAGUGAAA
.........(((((((.(((......(((((........))))).....(((.((((.((((.((.................)).)))).))))...)))..)))...))))))).. ( -26.53)
>DroSec_CAF1 47783 117 - 1
CCUAUCAUAACACUUGAUUCAACAUGGCCGCAAACCGCAGUGGCAACAAAGGGAAUGCCGCAAGACAACCGUAAAUCCCAUUUCCUGUGACAUUUUCCCUGCGAACUGCAAGUGAAA
..........((((((.(((......(((((........))))).....((((((((.((((.((.................)).)))).)))..)))))..)))...))))))... ( -28.63)
>DroSim_CAF1 48042 117 - 1
CCUAUCAUAACACUUGAUUCAACUUGGCCGCAAACCGCAGUGGCAACAAAGGGAAUGCCGCAAGACAACCGCAAAUCCCAUUUCCUGUGACAUUUUCCCUGCGAACUGCAAGUGAAA
..........((((((.(((......(((((........))))).....((((((((.(....).))..((((............)))).....))))))..)))...))))))... ( -28.90)
>DroEre_CAF1 49197 117 - 1
GCUAUCAUAACACUUGAUUCAACAAACCCGCAAACCGCAGUAGCAACAAAGGGAAAGCCGCAAGACAACCACAAAUCCCAUUUCCUGUGACAUUUUCCCUGCGAACUGCAAGUGAAG
..........((((((.(((.........((.....))....(((.....(((((((.(....).....((((............))))...)))))))))))))...))))))... ( -23.30)
>DroYak_CAF1 49432 117 - 1
CCUAUCAUAACACUUGAUUCAACAUAGCCGCAAACCGCAAUGACAACAAAGGGAAAGCCGCAAGACAACCGCAAAUCCCAUUUCCUGCGACAUUUUCCCUGCGAACUGCAAGUGAAG
..........((((((.(((..(((.((........)).))).......((((((((.(....).....((((............))))...))))))))..)))...))))))... ( -25.60)
>consensus
CCUAUCAUAACACUUGAUUCAACAUAGCCGCAAACCGCAGUGGCAACAAAGGGAAUGCCGCAAGACAACCGCAAAUCCCAUUUCCUGUGACAUUUUCCCUGCGAACUGCAAGUGAAA
..........((((((.(((......(((((........))))).....((((((...(....).....((((............)))).....))))))..)))...))))))... (-21.70 = -22.22 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:15 2006