Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,457,039 – 5,457,134 |
Length | 95 |
Max. P | 0.997089 |
Location | 5,457,039 – 5,457,134 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 96.98 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -24.66 |
Energy contribution | -25.06 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.93 |
SVM decision value | 2.80 |
SVM RNA-class probability | 0.997089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5457039 95 + 20766785 GGCAGAAUCCGCAAAUAACGAAUGCCAAACGUCCGAUU-UUCGAUUUGACUGUCGGGCGGGAAAUCCUUUUAGCCAAGUACUAUUAUUAGUACGAA- (((((((((((((.........)))....((((((((.-.((.....))..))))))))))).....)))).)))..((((((....))))))...- ( -28.30) >DroSec_CAF1 45391 96 + 1 GGCAGAAUCCGCAAAUAACGAAUGCCAAACGUCCGAUUUUUCGAUUUGACUGUCGGGCGGGAAAUCCUUUUAGCCAAGUACUAUUAUUAGUACGAA- (((((((((((((.........)))....((((((((...((.....))..))))))))))).....)))).)))..((((((....))))))...- ( -26.90) >DroSim_CAF1 45670 96 + 1 GGCAGAAUCCGCAAAUAACGAAUGCCAAACGUCCGAUUUUUCGAUUUGACUGUCGGGCGGGAAAUCCUUUUAGCCAAGUACUAUUAUUAGUACGAA- (((((((((((((.........)))....((((((((...((.....))..))))))))))).....)))).)))..((((((....))))))...- ( -26.90) >DroEre_CAF1 46851 96 + 1 GGCAGAAUCCGCAAAUAACGAAUGCCAAACGUCCGAUU-UUCGCAUUGACUGUCGGGCGGAAAAUCCUUUUAGCCAAGUACUAUUAUUAGUACGAAA (((.......(((.........)))....((((((((.-.((.....))..)))))))).............)))..((((((....)))))).... ( -26.70) >DroYak_CAF1 47010 95 + 1 GGCAGAAUCCGCAAAUAACGAAUGCCAAACGUCCGAUU-UUCGUUUUGACUGUCGGGCGGGAAAUCCUUUUAGCCAAGUACUAUUAUUAGUCCGAA- (((((((((((((.........)))....((((((((.-.((.....))..))))))))))).....)))).)))..(.((((....)))).)...- ( -23.70) >consensus GGCAGAAUCCGCAAAUAACGAAUGCCAAACGUCCGAUU_UUCGAUUUGACUGUCGGGCGGGAAAUCCUUUUAGCCAAGUACUAUUAUUAGUACGAA_ (((((((((((((.........)))....((((((((...((.....))..))))))))))).....)))).)))..((((((....)))))).... (-24.66 = -25.06 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:14 2006