Locus 1410

Sequence ID 2R_DroMel_CAF1
Location 5,450,885 – 5,450,992
Length 107
Max. P 0.678534
window2418

overview

Window 8

Location 5,450,885 – 5,450,992
Length 107
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 96.28
Mean single sequence MFE -16.98
Consensus MFE -13.99
Energy contribution -14.39
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.82
SVM decision value 0.30
SVM RNA-class probability 0.678534
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5450885 107 + 20766785
CGCCGCAAUUGAAUCGGAUCUUUCAAAUUGAAUUAAAUUCAUUUCU-UUUGGCUCAGCCCUCUUCACAUUACAUUUUAUCUGCGCUGAAACAAUUUUAAUUUGCAUAC
....(((((((((..((((..(((.....)))....))))......-.(((..(((((.(.....................).)))))..))).))))).)))).... ( -14.70)
>DroSec_CAF1 39263 107 + 1
CGCCGCAAUUGAAUUGGAUCUUUCAAAUUGAAUUAAAUUCAUUUCU-UUUGGCUCAGCCCUCUUCACAUUACAUUUUAUCUGCGCUGAAACAAUUUUAAUUUGCAUAC
....((((..(((.(((((..(((.....)))....))))).))).-.(((..(((((.(.....................).)))))..))).......)))).... ( -16.70)
>DroSim_CAF1 39353 107 + 1
CGCCGCAAUUGAAUUGGAUCUUUCAAAUUGAAUUAAAUUCAUUUCU-UUUGGCUCAGCCCUCUUCACAUUACAUUUUAUCUGCGCUGAAACAAUUUUAAUUUGCAUAC
....((((..(((.(((((..(((.....)))....))))).))).-.(((..(((((.(.....................).)))))..))).......)))).... ( -16.70)
>DroEre_CAF1 40089 108 + 1
CCCCGCAAUUGAAUUGGAUCUUUCAAAUUGAAUUCAAUUCAUUUGUUUUUGGCUCAGUCCUCUUCAAAUUACAUUUUAUCUGCGCUGAAACAAUUUUAAUUUGCAUGC
....((((.((((((((((...((.....)))))))))))).(((((.(..((.(((......................))).))..)))))).......)))).... ( -20.95)
>DroYak_CAF1 40325 107 + 1
CCCCGCAAUUGAAUUGGAUCUUUCAAAUUGAAUUAAACUCAUUUCU-UUUGGCUCAGUCCUCUUCACAUUACAUUUUAUCUGCGCUGAAACAAUUUUAAUUUGCAUAC
....((((..((((((.....(((.....))).............(-((..((.(((......................))).))..)))))))))....)))).... ( -15.85)
>consensus
CGCCGCAAUUGAAUUGGAUCUUUCAAAUUGAAUUAAAUUCAUUUCU_UUUGGCUCAGCCCUCUUCACAUUACAUUUUAUCUGCGCUGAAACAAUUUUAAUUUGCAUAC
....((((..((((((............(((((...)))))......((..((.(((......................))).))..)).))))))....)))).... (-13.99 = -14.39 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:12 2006