Locus 141

Sequence ID 2R_DroMel_CAF1
Location 1,402,346 – 1,402,466
Length 120
Max. P 0.873683
window306

overview

Window 6

Location 1,402,346 – 1,402,466
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.42
Mean single sequence MFE -32.98
Consensus MFE -26.88
Energy contribution -27.68
Covariance contribution 0.80
Combinations/Pair 1.06
Mean z-score -1.87
Structure conservation index 0.82
SVM decision value 0.88
SVM RNA-class probability 0.873683
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1402346 120 + 20766785
AACACGUACACACGCACACAGUGAAUUGAAAACCACACACGUGUAAAUGGAAACAAGUUGAAAUGCCUCAGCUACAUUUGGUCAAGUUUACAUGAGGCAAUGUACUUGGCAAGAGCCGAG
.....(((((...((.(.(((((((((....((((.....(((((..((....)).(((((......)))))))))).))))..))))))).)).)))..)))))(((((....))))). ( -30.60)
>DroSec_CAF1 28204 120 + 1
CACACGUACACACGCACACAGUGGAUUGAAAGCCACACACGUGUAAAUGGAAACAAGUUGAAAUGCCUCGGCUACAUUUGGUCAAGUUUACAUGAGGCAAUGUACUUGGCAAGAGCCGAG
.((((((......(....).((((........))))..))))))...((....))...........(((((((.......(((((((..((((......)))))))))))...))))))) ( -34.60)
>DroSim_CAF1 33160 120 + 1
AACACGUACACACGCACACAGUGGAUUGAAAGCCACACACGUGUAAAUGGAAACAAGUUGAAAUGCCUCGGCUACAUUUGGUCAAGUUUACAUGAGGCAAUGUACUUGGCAAGAGCCGAG
.((((((......(....).((((........))))..))))))...((....))...........(((((((.......(((((((..((((......)))))))))))...))))))) ( -34.60)
>DroEre_CAF1 26996 120 + 1
UUCACGUACACACGCACACAGCGGAUUGAAAGCCACACACGUGCAAACGGAAACAAGUUGAAAUGCCUCAGCUACAUUUGGUCAAGUUUACAUGAGGCAAUGUACUUGGCCAGAGGCGAG
.((.........(((.....)))........(((.....(((....)))......((((((......))))))...(((((((((((..((((......)))))))))))))))))))). ( -33.60)
>DroYak_CAF1 28851 120 + 1
AACACAUACACACGCAUACAGUGGAUUGAAAGCCACACACGUGUAAAUGGAAACAAGUUGAAAUGCCUCAGCUACAUUUGGUCAAGUUUACAUGAGGCAAUGUACUUGGCAAGAGGCGAG
............(((.....((((........)))).((.(((((..((....)).(((((......)))))))))).))(((((((..((((......))))))))))).....))).. ( -31.50)
>consensus
AACACGUACACACGCACACAGUGGAUUGAAAGCCACACACGUGUAAAUGGAAACAAGUUGAAAUGCCUCAGCUACAUUUGGUCAAGUUUACAUGAGGCAAUGUACUUGGCAAGAGCCGAG
.....(((((...((.....((((........))))...((((((((((....).((((((......))))))............)))))))))..))..)))))(((((....))))). (-26.88 = -27.68 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:18 2006