| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,441,523 – 5,441,616 |
| Length | 93 |
| Max. P | 0.638171 |
| Location | 5,441,523 – 5,441,616 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 92.10 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -24.24 |
| Energy contribution | -24.80 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5441523 93 + 20766785 UAACACACACACGCACAGCCAGCA-ACGAACACGUAUACGUAGGCUGGCGGUGAGGAUUUUCGUUUCGUGGUGAACUCACUCACACGCGCACAC .......(((.(((.(((((.((.-(((....)))....)).))))))))))).........((..((((((((......)))).)))).)).. ( -27.90) >DroSec_CAF1 30078 92 + 1 U--CACACACACGCACAGCCAGCAAACGGACACGUAUACGUAUGCUGGCGGUGAGGAUUUUCGUUUCGUGGUGAACUCACUUACACGCGCACAC (--(((.(((.(.(((.(((((((.(((..........))).))))))).))).)((........))))))))).................... ( -28.80) >DroSim_CAF1 30151 92 + 1 U--CACACACACGCACAGCCAGCAAACGGACACGUAUACGUAGGCUGGCGGUGAGGAUUUUCGUUUCGUGGUGAACUCACUCACACGCGCACAC .--....(((.(((.(((((.((..(((....)))....)).))))))))))).........((..((((((((......)))).)))).)).. ( -29.50) >DroYak_CAF1 31003 87 + 1 A----CAAACAGGCACAGCCACCA-ACGAACACG--UACGUAGGCUGGCGGUGAGGAUUUUCGUUUCGUGGUGAACUCACUCACACGCGCACAC .----.......((.(((((((..-(((....))--)..)).)))))((((((((((..((((........)))).)).))))).))))).... ( -26.50) >consensus U__CACACACACGCACAGCCAGCA_ACGAACACGUAUACGUAGGCUGGCGGUGAGGAUUUUCGUUUCGUGGUGAACUCACUCACACGCGCACAC ............((.(((((.((..(((....)))....)).)))))((((((((((..((((........)))).)).))))).))))).... (-24.24 = -24.80 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:09 2006