Locus 1403

Sequence ID 2R_DroMel_CAF1
Location 5,427,570 – 5,427,671
Length 101
Max. P 0.508909
window2406

overview

Window 6

Location 5,427,570 – 5,427,671
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 80.46
Mean single sequence MFE -27.36
Consensus MFE -15.86
Energy contribution -17.14
Covariance contribution 1.28
Combinations/Pair 1.19
Mean z-score -1.76
Structure conservation index 0.58
SVM decision value -0.05
SVM RNA-class probability 0.508909
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5427570 101 - 20766785
ACGCUCUACUGAGAUUCUGGAGUUCAUCAUGGAACCAAAAACGUUUUUUGAUGGUUGGCCUAAUUGAUUUGAGCCGAGAUCACAGCCUUGUGCAAGCAAGG
........(((.(((.((.(.((((((((.((..((((...((((....)))).))))))....)))..)))))).))))).)))((((((....)))))) ( -26.30)
>DroSec_CAF1 16353 91 - 1
---------GGAGGUUCUGGAGUUCAUCAUCGAACCAAAUACGUUUUUUGAUGGUUGGCUUAAUUGAUUUAGGCCGAGAUCACAGCCUUGUGCAAGUA-UG
---------.((((((.(((...((((((..((((.......))))..))))))(((((((((.....)))))))))..))).)))))).........-.. ( -25.80)
>DroSim_CAF1 16497 91 - 1
---------GGAGGUUCUGGAGUUCAUCAUCGAACCAAAUACGUUUUUUGAUGGUUGGCUUAAUUGAUUUAGGCCGAGAUCACAGCCUUGUGCAAGUA-CG
---------.((((((.(((...((((((..((((.......))))..))))))(((((((((.....)))))))))..))).))))))(((....))-). ( -26.60)
>DroEre_CAF1 16710 98 - 1
ACGCUCUUCAGAGCGUUUG--GUUCCCCAUCGAACCAAAUACGAUUUUUGAUGGUUGGUUUAAUUGAUUUAAGCCAAAAUCACAGCCUUGUGCAAGUG-CG
..((((....))))(((((--((((......)))))))))........((((..(((((((((.....))))))))).))))..(((((....))).)-). ( -31.40)
>DroYak_CAF1 17276 97 - 1
ACGCUCUUUUGAGGG-UUG--GUUCAUCAUCGAGCCAAAUAUGUUUUUAGAAGGUUGGUUUAAUUGAUUUAAGCCAAAAUCACAGCCUUGUGCAUGUG-CG
.(.(((....))).)-(((--((((......)))))))((((((....(.(((((((((((((.....))))))))........))))).))))))).-.. ( -26.70)
>consensus
ACGCUCU__GGAGGUUCUGGAGUUCAUCAUCGAACCAAAUACGUUUUUUGAUGGUUGGCUUAAUUGAUUUAAGCCGAGAUCACAGCCUUGUGCAAGUA_CG
..........((((((.((....((((((..((((.......))))..))))))(((((((((.....)))))))))...)).))))))............ (-15.86 = -17.14 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:01 2006