Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,013,892 – 1,014,012 |
Length | 120 |
Max. P | 0.840199 |
Location | 1,013,892 – 1,014,012 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.83 |
Mean single sequence MFE | -33.28 |
Consensus MFE | -22.73 |
Energy contribution | -21.40 |
Covariance contribution | -1.33 |
Combinations/Pair | 1.58 |
Mean z-score | -1.79 |
Structure conservation index | 0.68 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840199 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1013892 120 + 20766785 CCUCAACUUCAAUAAAGCGAGCUGCCAGUUUGCAGAACUGGCUAAAAUCCAAUUUACCAGUUGUUCCUUUAUCGACCUCUUUAAUAAGGGCCUUUACCGCAGGUGGUUCUAAUUUCUGAC ..................((((..((....(((..((((((.((((......))))))))))...(((((((..(.....)..)))))))........)))))..))))........... ( -26.00) >DroVir_CAF1 5679 120 + 1 CCUCGACCUCGAUGAAACGAGCCGCUAGCUUGCAAAAUUGGCUAAAAUUUAAUUUCUCAGUGGUGCCCUUGUCGACCUCCUUGAUGAGCGCUUUCACAGCUGGUGGUUCAAGCUUCUGGC (((((....)))......((((((((((((((..(((((((.......)))))))..))((((.((.((..((((.....))))..)).))..))))))))))))))))........)). ( -36.10) >DroPse_CAF1 60418 120 + 1 CCUCUACUUCAAUGAAACGAGCCGCCAGCUUGCAAAAUUGGCCAAAAUCCAAUUUACCAGAUGUUCCCUUAUCUACUUCUUUAAUGAGCGCUUUAACUGCUGGCGGCUCCAGCUUCUGAC ........(((.......(((((((((((..((.(((((((.......)))))))...(((((......)))))...............)).......))))))))))).......))). ( -33.44) >DroGri_CAF1 36703 120 + 1 CCUCGACCUCGAUGAAACGUGCAGCCAGCUUACAGAACUGAGCGAAGUUCAAUUUAGUGGAUGUGCCCUUAUCCACCUCCUUAAUCAGAGCUUUCACAGCUGGUGGUUCUAGCUUUUGGC ..(((....)))...........((((((((...(((((......)))))......(((((((......)))))))...........))))......((((((.....))))))..)))) ( -31.30) >DroMoj_CAF1 295 120 + 1 CCUCGACCUCGAUGAAGCGAGCCGCUAGCUUGCAAAACUGGCUGAAAUUCAGUUUGCCUGUGGUGCCCUUGUCCACCUCCUUGAUCAGAGCUUUCACAGCUGGUGGUUCGAGUUUUUGGC ........((((.((..((((((((((((..(((((.((((.......))))))))).(((((.((.((.(((.........))).)).))..)))))))))))))))))..)).)))). ( -39.40) >DroPer_CAF1 172379 120 + 1 CCUCUACUUCAAUGAAACGAGCCGCCAGCUUGCAAAAUUGGCCAAAAUCCAAUUUACCAGAUGUUCCCUUAUCUACUUCUUUAAUGAGCGCUUUAACUGCUGGCGGCUCCAGCUUCUGAC ........(((.......(((((((((((..((.(((((((.......)))))))...(((((......)))))...............)).......))))))))))).......))). ( -33.44) >consensus CCUCGACCUCAAUGAAACGAGCCGCCAGCUUGCAAAACUGGCCAAAAUCCAAUUUACCAGAUGUGCCCUUAUCCACCUCCUUAAUGAGCGCUUUCACAGCUGGUGGUUCCAGCUUCUGAC ..................((((((((((((((..(((((((.......)))))))..))).......(((((...........)))))..........)))))))))))........... (-22.73 = -21.40 + -1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:26 2006