Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,405,951 – 5,406,071 |
Length | 120 |
Max. P | 0.517607 |
Location | 5,405,951 – 5,406,071 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.33 |
Mean single sequence MFE | -28.46 |
Consensus MFE | -19.06 |
Energy contribution | -19.38 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.17 |
Mean z-score | -2.02 |
Structure conservation index | 0.67 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5405951 120 - 20766785 UUCGAUUCAUUGUAAAAAGAGCCUUUUCAUCAAGUGGCUUAGCUUUUUGUUUUAGCUUAGCCAGCAUCUUAGGAUUGGGGCAAUUGAAUUUGUACUUGAAUCUUUGACGAACAUCAUUGC ...((((((..(((..((..(((((.((...((((((((.((((.........)))).)))))....)))..))..)))))..)).......))).)))))).................. ( -25.00) >DroSec_CAF1 7677 120 - 1 UUCGAUUCAUUGUAAAAAUUGCCUUUUCAUCCAAUGGCUUAGCUUUUUGUUUUAGCUUAGCCAGCAUCUUUGGAUUGGGGCAAUUGAAUUUAUACUUGAAUCUUUGACGAACAUCUUUGC ...((((((.(((((((((((((((...(((((((((((.((((.........)))).)))))......)))))).)))))))))...))))))..)))))).................. ( -35.30) >DroSim_CAF1 6169 120 - 1 UUCGAUUCAUUGUAAAAAUUGCCUUUUCAUCCAAUGGCUUAGCUUUUUGUUUUAGCUUAGCCAGCAUCUUUGGAUUGGGGCAAUUGAAUUUAUACUUGAAUCUUUGACGAACAUCUUUGC ...((((((.(((((((((((((((...(((((((((((.((((.........)))).)))))......)))))).)))))))))...))))))..)))))).................. ( -35.30) >DroEre_CAF1 7625 120 - 1 UUCGAAUUAUUGUUAAAAGGGCCUUCUCAUCCAGCGGCUUAGCCUUUUCUGUUAGCUUAGCCAGCAACUUAAGAUCAGGGCAAUUAAAUUUAUACUUGAAUCUUUGACGAACAUCGUUGC ..(((....((((((((...(((((((......((((((.(((...........))).)))).))......)))...))))......(((((....))))).))))))))...))).... ( -22.20) >DroYak_CAF1 6406 120 - 1 CUCUAUUCAUUGUAAGAAGGGCCUUCUCAUCCAGUGGCUUAGCUUUUUCUGUAAGCUUAGCCAGCAUCUUAGGAUUAAUGCAAUUAAAUUUAUAAUUGAAUUUUUUACGAACAUCGUUGC ...((((.(((.(((((.(((........)))..(((((.(((((.......))))).)))))...))))).))).))))((((((......))))))........(((.....)))... ( -24.50) >consensus UUCGAUUCAUUGUAAAAAGGGCCUUUUCAUCCAGUGGCUUAGCUUUUUGUUUUAGCUUAGCCAGCAUCUUAGGAUUGGGGCAAUUGAAUUUAUACUUGAAUCUUUGACGAACAUCGUUGC ...((((((.((((((((..(((((.((......(((((.((((.........)))).))))).........))..)))))..))...))))))..)))))).................. (-19.06 = -19.38 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:48 2006