| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,399,123 – 5,399,227 |
| Length | 104 |
| Max. P | 0.717933 |
| Location | 5,399,123 – 5,399,227 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 78.43 |
| Mean single sequence MFE | -23.85 |
| Consensus MFE | -15.44 |
| Energy contribution | -14.38 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5399123 104 - 20766785 UUCAGGCCAUGCUGGAUCACAUUAAGCACUCGAUUGUCAGCCUGCAGAUUGCCAAAAACAUGGCCCACCCAAUAAAUGGAAUCUACAACGGUC---CA----------CCGGCCACG- ....((((....((((((.......(((..(........)..)))(((((((((......))))....(((.....)))))))).....))))---))----------..))))...- ( -27.70) >DroVir_CAF1 4264 105 - 1 UGCAGGCCAUGUUGGAUCAUAUCAAACACUCGAUUGUUAGUCUACAAAUUGCCAAAAAUAUGGCACACCCCAUCAAUGGCAUUUACAAUGGCC---CC----------ACCACUACGC .((..(((((..(((..................((((......))))..(((((......)))))....)))...)))))........(((..---..----------.)))....)) ( -21.10) >DroGri_CAF1 4330 98 - 1 UGCAGGCCAUGCUGGAUCAUAUCAAGCACUCGAUUGUAAGUCUACAAAUUGCCAAAAAUAUGGCGCACCCCAUCAACGGCAUUUACAACGGCC---CC----------ACC------- ....((((.((((.(((...))).))))...(.((((((((.........((((......)))).....((......)).)))))))))))))---..----------...------- ( -23.10) >DroWil_CAF1 8661 114 - 1 UUCAGGCCAUGUUGGAUCAUAUCAAACACUCGAUUGUUAGUCUACAAAUUGCCAAAAAUAUGGCACAUCCCAUCAAUGGUAUUUACAAUGGUC---CCACAAUGGCCACAGGAAGCU- ....((((((((.(((((((.............((((......))))..(((((......)))))....(((....)))........))))))---).)).))))))..........- ( -30.00) >DroMoj_CAF1 4365 101 - 1 UGCAGGCCAUGUUGGAUCAUAUCAAACACUCAAUUGUUAGUCUACAAAUUGCCAAAAAUAUGGCGCACCCCGUCAAUGGCAUUUACAAUGGCC---CC----------ACAGUU---- ....(((((((((.(((...))).)))......((((......))))..(((((......(((((.....))))).)))))......))))))---..----------......---- ( -20.60) >DroAna_CAF1 3277 107 - 1 UUUAGGCCAUGCUGGAUCACAUCAAGCACUCAAUCGUCAGCCUACAGAUUGCCAAGAACAUGGCCCACCCAAUCAACGGAAUAUACAACGGCCCUCCC----------CCGGUGACC- ....(((((((((.(((...))).)))...(((((...........)))))........))))))(((((.......)).........(((.......----------))))))...- ( -20.60) >consensus UGCAGGCCAUGCUGGAUCAUAUCAAACACUCGAUUGUUAGUCUACAAAUUGCCAAAAAUAUGGCACACCCCAUCAAUGGCAUUUACAACGGCC___CC__________ACGGCUAC__ ....((((.((((.(((...))).)))).....((((......))))...((((......)))).........................))))......................... (-15.44 = -14.38 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:46 2006