| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,397,249 – 5,397,354 |
| Length | 105 |
| Max. P | 0.686059 |
| Location | 5,397,249 – 5,397,354 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.47 |
| Mean single sequence MFE | -32.48 |
| Consensus MFE | -22.10 |
| Energy contribution | -22.60 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5397249 105 - 20766785 AUAUAACUCAUAAGCAUCUUACCCA---------AUAGAAUAUCGGAUCUGGAUGAUCCACGCGACAGAAUCGUCCAGGUCUGCCGCUGGUAUAUGAGUGCUUACCAUGCUGGG ..........((((((.((((....---------.(((.....((((((((((((((.(........).))))))))))))))...))).....))))))))))((.....)). ( -32.10) >DroPse_CAF1 5273 101 - 1 A-CUGAGUGAUGCG---CUUAAACC---------ACAGAAUCUCGGAGCUGGACGACCCACGCGAUCGAAUUGUCCAGGUCUGCCGCUGGUAUCUGAGUGCCUACCACGCCGGA .-(((.(((..(((---((((....---------.(((.....((((.((((((((..(........)..)))))))).))))...))).....)))))))....)))..))). ( -33.40) >DroSec_CAF1 1664 105 - 1 AUAUCACUUAUAAGCAUCUUACCCA---------AUAGAAUAUCGGAUCUGGAUGAUCCACGCGACAGAAUCGUCCAGGUCUGCCGCUGGUAUAUGAGUGCUUACCAUGCUGGG ..........((((((.((((....---------.(((.....((((((((((((((.(........).))))))))))))))...))).....))))))))))((.....)). ( -32.10) >DroYak_CAF1 2870 105 - 1 AUAUAACUCAUAAGCAUCAUACCCA---------ACAGAAUAUCAGAUCUGGAUGAUCCACGCGACAGAAUCGUCCAGGUCUGCCGCUGGUAUAUGAGUGCUUACCAUGCUGGA ..........(((((((((((....---------.(((.....((((((((((((((.(........).))))))))))))))...)))...))))).))))))((.....)). ( -35.00) >DroAna_CAF1 1642 114 - 1 AUCCCACUCUGAACUCUUUUAACGAAGACUCUUGGCAGAAUCUCUGAGCUGGAUGAUCCGCGCGACAGGAUAGUGCAGGUAUGCCGCUGGUACUUGAGUGCCUACCAUGCUGGA ...(((..(((.(((((((....))))).(((((.(((.....))).(((((.....))).))..)))))..)).)))(((((.....(((((....)))))...)))))))). ( -28.90) >DroPer_CAF1 5270 101 - 1 A-CUGAGUGAUGCG---CUUAACCC---------ACAGAAUCUCGGAGCUGGACGACCCACGCGAUCGAAUUGUCCAGGUCUGCCGCUGGUAUCUGAGUGCCUACCACGCCGGA .-(((.(((..(((---((((....---------.(((.....((((.((((((((..(........)..)))))))).))))...))).....)))))))....)))..))). ( -33.40) >consensus AUAUAACUCAUAAGCAUCUUAACCA_________ACAGAAUAUCGGAGCUGGAUGAUCCACGCGACAGAAUCGUCCAGGUCUGCCGCUGGUAUAUGAGUGCCUACCAUGCUGGA ...........................................((((.(((((((((.(........).))))))))).))))(((((((((..........))))).)).)). (-22.10 = -22.60 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:45 2006