| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,395,701 – 5,395,811 |
| Length | 110 |
| Max. P | 0.513673 |
| Location | 5,395,701 – 5,395,811 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.18 |
| Mean single sequence MFE | -32.84 |
| Consensus MFE | -20.34 |
| Energy contribution | -21.12 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513673 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5395701 110 + 20766785 ----------UGACGUACCUUGUGCUCCCAGGCCAGAUCGUAUUCCUUGCGCACCUUGGCUUGAUCACGCUGCUGUUGCUCCACAACGAAUUUGGCAGUUGUAGCGCGCUCGAUGUCAUU ----------((((((.....((((...((((((((..((((.....))))....)))))))).....(((((..(((((.............)))))..)))))))))...)))))).. ( -36.72) >DroVir_CAF1 140 115 + 1 ----AAAUC-UAGCAUACCUUAUGCUCCCAAGCUAAGUCGUAUUCCUUGCGAACCUUGGCCUGAUCACGCUGCUGCUGCUCCACAACAAAUUUGGCAUUUGUGGCGCGCUCAAUGUCAUU ----.....-.((((((...))))))..((.(((((((((((.....)))))..)))))).))...(((.((..((.((.((((((............)))))).)))).)).))).... ( -27.90) >DroGri_CAF1 147 116 + 1 ----AAUUUAUACAUUACCUUAUGAUCCCAAGCCAAGUCGUAUUCCUUGCGGACCUUGGCCUGAUCACGCUGCUGCUGUUCUACAACAAAUUUGGCAUUGGUGGCACGUUCAAUAUCAUU ----...................((((....(((((((((((.....)))))..))))))..))))(((.(((..(((.....(((.....)))....)))..))))))........... ( -26.40) >DroMoj_CAF1 134 119 + 1 UAUUUAAUU-UAGUUUACUUUGUGCUCCCAAGCCAAGUCGUAUUCCUUGCGAACCUUUGCUUGAUCGCGCUGCUGCUGCUCCACGACGAAUUUGGCGUUUGUCGCGCGCUCGAUGUCAUU .........-......((.(((.((...(((((.((((((((.....)))))..))).)))))...((((.((....)).....(((((((.....))))))))))))).))).)).... ( -31.70) >DroAna_CAF1 141 110 + 1 ----------GAGAGUACCUUGUGCUCCCAGGCCAGGUCGUACUCCUUGCGGACUUUGGCCUGGUCGCGCUGCUGCUGCUCCACCACGAAUUUGGCAUUGGUGGCGCGUUCGAUGUCAUU ----------..((((((...))))))(((((((((((((((.....))).))).))))))))).(((((..((..((((.............))))..))..)))))............ ( -43.92) >DroPer_CAF1 3562 116 + 1 --UUUAAU--UUGAUUACCUUGUGCUCCCAGGCCAGGUCGUAUUCUUUGCGCAUCUUGACUUGAUCCCUCUGCUGUUGUUCCACAACAAAUUUGGCAUUGGUGGCACGUUCAAUGUCGUU --......--..(((.....(((((..(((((((((((((((.....)))).)))..................(((((.....)))))....)))).))))..)))))......)))... ( -30.40) >consensus _____AAU__UAGAUUACCUUGUGCUCCCAAGCCAAGUCGUAUUCCUUGCGAACCUUGGCCUGAUCACGCUGCUGCUGCUCCACAACAAAUUUGGCAUUGGUGGCGCGCUCAAUGUCAUU ................((.(((.((...((((((((((((((.....)))))..)))))))))....((((((...((((.............))))...)))))).)).))).)).... (-20.34 = -21.12 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:44 2006