Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,374,391 – 5,374,511 |
Length | 120 |
Max. P | 0.942202 |
Location | 5,374,391 – 5,374,511 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.06 |
Mean single sequence MFE | -37.57 |
Consensus MFE | -32.36 |
Energy contribution | -32.03 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.08 |
Mean z-score | -3.11 |
Structure conservation index | 0.86 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.942202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5374391 120 + 20766785 GAGCUGAUAAGAGGGCCACGCCUCCGUCUGAAUGGAAAUCUUUUAUAAGCUAUCAGGCCAAUGGUGCAAAACCGGCCAGUCAUUCCCAAUUACUGGACGUACCAUAUCUUAUCAGCUCCA ((((((((((((.((((.....(((((....)))))...(((....)))......)))).(((((((........(((((.((.....)).)))))..))))))).)))))))))))).. ( -42.40) >DroSec_CAF1 2960 120 + 1 GAGCAGAUAAGAGGGCCACGCCUCCGUCUGAAUGGAAAUCUUUUAGAAGCUAUCAGGCCAAUGGUGCAAAACUGGCCAGUCAUUCCCAAUUACUGGACAUACAUUAUCUUAUCAGCUCCG ((((.(((((((.(((((((((...((((((.(((...((.....))..)))))))))....))))......)))))........(((.....)))..........))))))).)))).. ( -37.20) >DroEre_CAF1 777 120 + 1 GAGCAGAUAAGAGGACCACGCCUCCGUCUGAAUGGAAAUCUUUCAGAAGCUAUCAGGCCAAUGGUGCAAAACCAGCCAGUCAUUCCUAAUUACUGGACAUACCCUAUCUUAUCAGUUCCA ((((.((((((((.((((.((((...((((((.((....)))))))).......))))...)))).).......((((((.((.....)).))))).)........))))))).)))).. ( -33.10) >consensus GAGCAGAUAAGAGGGCCACGCCUCCGUCUGAAUGGAAAUCUUUUAGAAGCUAUCAGGCCAAUGGUGCAAAACCGGCCAGUCAUUCCCAAUUACUGGACAUACCAUAUCUUAUCAGCUCCA ((((.((((((((.((((.((((...((((((.((....)))))))).......))))...)))).).......((((((.((.....)).))))).)........))))))).)))).. (-32.36 = -32.03 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:40 2006