Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,364,937 – 5,365,041 |
Length | 104 |
Max. P | 0.620307 |
Location | 5,364,937 – 5,365,041 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 78.52 |
Mean single sequence MFE | -32.73 |
Consensus MFE | -21.67 |
Energy contribution | -23.62 |
Covariance contribution | 1.95 |
Combinations/Pair | 1.08 |
Mean z-score | -1.30 |
Structure conservation index | 0.66 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5364937 104 + 20766785 UACGGUUGCGCACCUCCUUGGCGAAGGCCUCCGGACCUUCGCACACCAGGACCUCGCGGAGUCCCUUCGGUGGUUCCGUAACUGUAUAUACCAUAAAAUCG---UGU (((((((((((...(((((((((((((((...)).))))))).))..))))....))((((.(((....).)))))))))))))))...............---... ( -39.40) >DroPse_CAF1 7601 103 + 1 UGCGGGAGCGAACCUCCUUGGCAAAGGCCUCGGGACCCUGGCGUACCAGAAUAUCGCGUAGACCGCAAGGUGGCUCCGUAACUGUGCAA----GAGACUCAAAACAU ((((((.((((...((((.(((....)))..))))..((((....))))....))))((..(((....))).)))))))).........----.............. ( -32.00) >DroSim_CAF1 7539 104 + 1 UUCGGUUGCGCACCUCCUUGGCGAAGGCCUCUGGACCUUCGCACACCAGGACCUCGCGGAGUCCCUUCGGUGGUUCCGUAACUGCAUAUACCAUAAAAUCG---UGU ..(((((((((...(((((((((((((((...)).))))))).))..))))....))((((.(((....).))))))))))))).................---... ( -36.30) >DroEre_CAF1 7540 104 + 1 UUCGGUUGCGCACCUCCUUGGCAAAAGCUUCUGGACCUUCGCACACCAGGACCUCGCGGAGUCCCUUCGGUGGUUCCGUAACUGCAUGCACCAUAAAAUCA---UAU ...(((((((....(((..(((....)))...)))....)))).))).((.....((((((.(((....).))))))))...((....)))).........---... ( -28.60) >DroYak_CAF1 7735 104 + 1 UUCGGUUGCGCACCUCCUUGGCAAAGGCCUCCGGACCUUCGCACACUAGAACCUCCCGAAGUCCCUUUGGUGGUUCCGUAACUGCAUACACCAUAAAAUCA---UAU ..((((((((........((((.((((((...)).)))).)).))...(((((..((((((...)))))).))))))))))))).................---... ( -28.10) >DroPer_CAF1 11973 103 + 1 UGCGGGAGCGAACCUCCUUGGCAAAGGCCUCGGGACCCUGGCGUACCAGAAUAUCGCGUAGACCGCAAGGUGGCUCCGUAACUGUGCAA----GAGACUCAAAACAU ((((((.((((...((((.(((....)))..))))..((((....))))....))))((..(((....))).)))))))).........----.............. ( -32.00) >consensus UUCGGUUGCGCACCUCCUUGGCAAAGGCCUCCGGACCUUCGCACACCAGAACCUCGCGGAGUCCCUUCGGUGGUUCCGUAACUGCAUAAACCAUAAAAUCA___UAU ..((((((((..((.((..(((....)))...((((.(((((.............)))))))))....)).))...))))))))....................... (-21.67 = -23.62 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:39 2006