| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,338,483 – 5,338,590 |
| Length | 107 |
| Max. P | 0.655294 |
| Location | 5,338,483 – 5,338,590 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.36 |
| Mean single sequence MFE | -39.95 |
| Consensus MFE | -25.29 |
| Energy contribution | -26.52 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.655294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5338483 107 + 20766785 -GGAGGAGUUGCAGGUGCUGCGGCAGAGCCAACUGCGCUUGAUGGGCUCCUCCAGCAGGGAUUUCAGCAAGUCGUUCGACGAGACUUGUCUCUAAA-AAGGU--AAUAUUA -(((((((((.(((((((...(((...)))....)))))))...)))))))))...((((......(((((((.........)))))))))))...-.....--....... ( -38.40) >DroVir_CAF1 4272 108 + 1 UGGAAGAGUUGCAGGCGCUGCGGCACAACCAACUGCGCUUGAUCGGCUCCUCCAGCAGCGAUUUUAGAAGAUCCGUGGAAGAGACUUGACGCUGUA-AACAG--AGAAAUA ((((.(((((((((((((...((.....))....)))))))..)))))).))))((((((((((....))))).((.((......)).))))))).-.....--....... ( -34.10) >DroGri_CAF1 3836 108 + 1 UGGAAGAAUUACAGGCGCUGCGGCACAGCCAGCUGCGCUUGAUGGGCUCCUCCAGCAGCGACUUCAACAGAUCCGUCGAGGAUAAUUGGCGCUGAA-AGGGC--GGAAAUA ...........(((((((.(((((...))).)).)))))))......(((.((..(((((...((((...((((.....))))..)))))))))..-..)).--))).... ( -38.40) >DroEre_CAF1 3501 109 + 1 -GGAGGAGUUGCAGGUGCUGCGACAGAGCCAGCUGCGCUUGAUGGGCUCCUCCAGCAGGGAUUUAAGCAGGUCGUUCGACGAGACUUGUCGCUGAA-AGGAUUACGUAUUA -(((((((((.(((((((.((..........)).)))))))...)))))))))..(((.(......(((((((.........)))))))).)))..-.............. ( -38.80) >DroYak_CAF1 3535 106 + 1 -GGAGGAGUUGCAGGUGCUGCGGCAGAGCCAGCUGCGCUUGAUGGGCUCCUCCAGCAGGGAUUUCAGCAGGUCGUUCGAGGAGACUUGUCGCUGAA-AGCA---GCUAUUA -(((((((((.(((((((.(((((...))).)).)))))))...)))))))))(((...(.(((((((.((.....((((....))))))))))))-).).---))).... ( -48.00) >DroAna_CAF1 3364 108 + 1 -UGAGGAGUUGCAGGUGCUCCGGCACAGCCAACUGCGCUUGAUGGGCUCCUCCAGCAAGGACUUGAGCAGAUCGUUCGAGGAAACCUGCCUCUGUGGAUGGG--GGUAUUG -.((((((((.(((((((...(((...)))....)))))))...)))))))).....(((.(((((((.....)))))))....)))((((((......)))--))).... ( -42.00) >consensus _GGAGGAGUUGCAGGUGCUGCGGCACAGCCAACUGCGCUUGAUGGGCUCCUCCAGCAGGGAUUUCAGCAGAUCGUUCGAGGAGACUUGUCGCUGAA_AGGAG__GGUAUUA .(((((((((.(((((((...(((...)))....)))))))...)))))))))..(((((...........((....))..........)))))................. (-25.29 = -26.52 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:35 2006