Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,337,164 – 5,337,277 |
Length | 113 |
Max. P | 0.824102 |
Location | 5,337,164 – 5,337,277 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 77.59 |
Mean single sequence MFE | -32.08 |
Consensus MFE | -16.04 |
Energy contribution | -17.52 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.29 |
Mean z-score | -2.16 |
Structure conservation index | 0.50 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5337164 113 + 20766785 A----CCAGUAACUAACCCCUUUUCUUGUCCUCUUCGAUCUCUUUGAUGACAGAUACUAUUUCAUCAUAUGUCGAGUCCCUGGAGUCCUCAUUCGACUUUAGGGACAACUGGGAGGC .----(((((........................(((((.....((((((...........))))))...)))))((((((((((((.......)))))))))))).)))))..... ( -35.90) >DroVir_CAF1 2810 113 + 1 G----CUGCAAGAUCACCUCGCUUCUUAUCCUCCUCAAUCUCCUUGAUGACGGACACAAUCUCAUCGUAGGUGGAGCCUCUGGAAUCAUCAUUCGACUUGAGCGACAGCUGUGAGGC .----...........((((((..((.....(((((((((....((((((((((.....((.(((.....)))))...))))...))))))...)).))))).)).))..)))))). ( -25.60) >DroPse_CAF1 3483 117 + 1 UCUGUCUAACAAUUUACCUCUCUUCUUGUCCUCUUCGAUCUCCUUGAUCACCGACACGAUCUCGUCGUAGGUGGAGUCCCUGGAGUCUUCGUUUGACUUCAGGGACAGCUGUGACCC ...(((..(((.(((((((.................((((.....))))..((((........)))).)))))))((((((((((((.......))))))))))))...)))))).. ( -39.40) >DroEre_CAF1 2182 113 + 1 G----CCGCUAACUUACCCCUUUUCUUGUCCUCCUCGAUUUCCUUGAUGACAGAUACUAUUUCAUCAUAGGUGGAAUCUCUGGAGUCCUCAUUCGACUUCAGGGACAAUUGGGAGGC .----...........(((((....((((((.....((((((((((((((...........))))))..)).)))))).((((((((.......))))))))))))))..))).)). ( -33.20) >DroMoj_CAF1 3066 113 + 1 U----CUGACAGCGAACCCCGUUUCUUAUCCUCCUCGAUCUCCUUGAUAACUGACACAAUCUCAUCGUAUGUCGAGCCUCUGGAGUCCUCGUUCGAUUUGAGUGAUAAUUGAGAGCC .----.(((((((((.....(((..(((((...............)))))..))).........)))).))))).(((((....(((((((.......)))).)))....))).)). ( -19.00) >DroPer_CAF1 3609 117 + 1 UCUGUCUAACAAUUUACCUCUCUUCUUGUCCUCUUCGAUCUCCUUGAUCACCGACACUAUCUCGUCGUAGGUGGAGUCCCUGGAGUCUUCGUUUGACUUCAGGGACAGCUGUGACCC ...(((..(((.(((((((.................((((.....))))..((((........)))).)))))))((((((((((((.......))))))))))))...)))))).. ( -39.40) >consensus U____CUAACAACUUACCCCUCUUCUUGUCCUCCUCGAUCUCCUUGAUGACAGACACUAUCUCAUCGUAGGUGGAGUCCCUGGAGUCCUCAUUCGACUUCAGGGACAACUGUGAGCC ............................(((.(((..(((.....)))....(((........)))..))).)))((((((((((((.......))))))))))))........... (-16.04 = -17.52 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:34 2006