Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,330,979 – 5,331,080 |
Length | 101 |
Max. P | 0.953492 |
Location | 5,330,979 – 5,331,080 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 81.29 |
Mean single sequence MFE | -37.60 |
Consensus MFE | -25.14 |
Energy contribution | -27.20 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.07 |
Mean z-score | -2.34 |
Structure conservation index | 0.67 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953492 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5330979 101 - 20766785 UUCGAGCGGUUACGCUGCUGCUCUUUCCUUGGGGCUCUGGCACACUUAUAUGUUCCUGAUGUUCGGGGAAGUGGGUGCAAAGAACCAGAGUUCCAUCA-------GCC ...(((((((......)))))))......(((((((((((..(((((((...((((((.....)))))).))))))).......)))))))))))...-------... ( -40.50) >DroSec_CAF1 7593 94 - 1 UUCGAGCGGUUACGCUGUUGCUGU-UCCUUGGGGCUCUGGCACACUUA--UGUUCCUGAUGUUAGGGGAAGU----GCCAAGAGCCAGAGUUCCAUCA-------GCC ....((((....))))...((((.-....((((((((((((.(((((.--...(((((....))))).))))----)......)))))))))))).))-------)). ( -37.30) >DroSim_CAF1 7479 98 - 1 UUCGAGCGGUUACGCUGUUGCUGU-UCCUUGGGGCUCUGGCACACUUA--UGUUCCUGAUGUUAGGGGAAGUGGGUGCAAAGCGCCAGAGUUCCAUCA-------GCC ....((((....))))...((((.-....((((((((((((.((((((--(.(((((.......))))).)))))))......)))))))))))).))-------)). ( -41.70) >DroEre_CAF1 7455 97 - 1 UUCGAGUGGUUAUGCUGCUGUUGUUUCCUUGGGGCUCUGGCACACUUA--UGUGCUUG---------GAAGUGGGUGCAAAAGCCCAGAGUUCCAUCGACCAUCAUCC .(((((..(.....)..)...........(((((((((((....(((.--((..(((.---------.....)))..)).))).)))))))))))))))......... ( -30.90) >consensus UUCGAGCGGUUACGCUGCUGCUGU_UCCUUGGGGCUCUGGCACACUUA__UGUUCCUGAUGUUAGGGGAAGUGGGUGCAAAGAGCCAGAGUUCCAUCA_______GCC ....(((((.....)))))..........((((((((((((.((((((....(((((.......)))))..))))))......))))))))))))............. (-25.14 = -27.20 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:33 2006