Locus 1382

Sequence ID 2R_DroMel_CAF1
Location 5,328,127 – 5,328,228
Length 101
Max. P 0.994329
window2377

overview

Window 7

Location 5,328,127 – 5,328,228
Length 101
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 88.28
Mean single sequence MFE -54.15
Consensus MFE -47.16
Energy contribution -46.35
Covariance contribution -0.81
Combinations/Pair 1.26
Mean z-score -2.95
Structure conservation index 0.87
SVM decision value 2.47
SVM RNA-class probability 0.994329
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5328127 101 - 20766785
UGGAGCUGCUCCGGCGGGUGCGGCUCCUUCUGCUGCUGGAGAAACAGCUUCAGCUCCGGCGGCAGGGGUGGCAGUUGCGCCCGGCUCACCAGUUCCGCCAA
.(((((((....(.(((((((((((((.(((((((((((((............)))))))))))))...)).))))))))))).)....)))))))..... ( -58.40)
>DroSec_CAF1 4729 101 - 1
UGGAGCUGCUCCGGCGGGUGCUGCUCCAUCUGCUGCUGGAGAAACUGCUUCAGCUCCGGCGGCUGGGGCAGCAGUUGCGCCCGGCUCACCAGUUCCGUCAA
.(((((((..((((((.(((((((((((...((((((((((...(((...)))))))))))))))))))))))..).)).)))).....)))))))..... ( -54.50)
>DroSim_CAF1 4604 101 - 1
UGGAGCUGCUCCGGCGGGUGCGGCUCCAUCUGCUGCUGGAGAAACUGCUUCAGCUCCGGCGGCUGGGGCAGCAGUUGCGCCCGGCUCACCAGUUCCGUCAA
.(((((((....(.((((((((((((((...((((((((((...(((...)))))))))))))))))))......)))))))).)....)))))))..... ( -52.90)
>DroYak_CAF1 4994 101 - 1
UGGAGCUGCGCCGGCGGGGGUGCCUCCCUCUGCUGCUGGAGAAGCUGCUCCAUCUGCAGCGCCGGGGGCAGCAGUUGCUUCUGGCUCGCCAGUUACGCCAA
(((.(((((.((((((((((.....))))).((((((((((......)))))...)))))))).)).))))).((.....((((....))))..)).))). ( -50.80)
>consensus
UGGAGCUGCUCCGGCGGGUGCGGCUCCAUCUGCUGCUGGAGAAACUGCUUCAGCUCCGGCGGCUGGGGCAGCAGUUGCGCCCGGCUCACCAGUUCCGCCAA
.(((((((....(.((((((((((((((.((((((((((((......)))))))...))))).))))))......)))))))).)....)))))))..... (-47.16 = -46.35 +  -0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:32 2006