Locus 1380

Sequence ID 2R_DroMel_CAF1
Location 5,324,099 – 5,324,199
Length 100
Max. P 0.754769
window2374

overview

Window 4

Location 5,324,099 – 5,324,199
Length 100
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 78.82
Mean single sequence MFE -19.23
Consensus MFE -14.00
Energy contribution -14.90
Covariance contribution 0.90
Combinations/Pair 1.15
Mean z-score -1.60
Structure conservation index 0.73
SVM decision value 0.49
SVM RNA-class probability 0.754769
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5324099 100 - 20766785
-----------------UCUU---GCAACGAAGAAUUGAAUGAGUCCCGUUUGAGAUAACUUUCAAAAUCAACUUUCAGUUCUUGCUAAAAAUGUUUUCUCAUUAGCAUUCCAUUUCCAA
-----------------...(---((....(((((((((..((((....(((((((....)))))))....)))))))))))))......((((......)))).)))............ ( -19.30)
>DroSim_CAF1 812 99 - 1
-----------------UCUU---GCAACGAAGAAUUGAAUGAGUCCCGUUUGAGAUAACUUUCAAAAUCAGCUUUCAGUUCUCGCUGAAAAUGUUUUCUCAUUAGCAUUCCAUU-CCAA
-----------------...(---((..(((.(((((((..((((....(((((((....)))))))....)))))))))))))).....((((......)))).))).......-.... ( -20.00)
>DroYak_CAF1 801 120 - 1
AAAAUACUUUGAAAAAUUCUUUUUCAAAAAAACAAUUGAAUGAGGCACGUUUGAGAUAACUUCCAGAAUCAGCUAUCAGUUCUUGCUAAAAGUGUUAUCUCAUUAGCAUUCCAUUUCCAA
.......((((((((.....)))))))).........(((((..(..(...(((((((((....(((((.........))))).((.....)))))))))))...)..)..))))).... ( -18.40)
>consensus
_________________UCUU___GCAACGAAGAAUUGAAUGAGUCCCGUUUGAGAUAACUUUCAAAAUCAGCUUUCAGUUCUUGCUAAAAAUGUUUUCUCAUUAGCAUUCCAUUUCCAA
..............................(((((((((..((((....(((((((....)))))))....)))))))))))))((((...(((......)))))))............. (-14.00 = -14.90 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:29 2006