| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,322,515 – 5,322,612 |
| Length | 97 |
| Max. P | 0.845750 |
| Location | 5,322,515 – 5,322,612 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 68.72 |
| Mean single sequence MFE | -20.86 |
| Consensus MFE | -3.72 |
| Energy contribution | -4.96 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.18 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.845750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5322515 97 - 20766785 UGAAUGGUUUGAAAACAGGGUAUCCA------UGUUUUAUCUCGCUUUUACCGUUUCAUUCAAAAA---AAUUAAAUUACU------UUUUAAUGAAGUUUUCAAACUACAA ....((((((((((((..((((....------.((........))...))))..((((((.(((((---...........)------))))))))))))))))))))))... ( -19.90) >DroSec_CAF1 39530 104 - 1 AAAAUGGUUUGAAAAUAGGAAAUCCA------UGUAUUUUCUCUCUUUUACCCUUUAAUUUAGAAA--AUAUUGAAUUCCUCGAAGUUUUUAAUGAAGGUUUCAAACCAUAA ...(((((((((((..(((((((...------...))))))).........((((((..(((((((--...((((.....))))..)))))))))))))))))))))))).. ( -24.40) >DroSim_CAF1 45787 104 - 1 UAAAUGGUUUGAAAACAGGGUAUCCA------CGUAUUUUCUCGCUUUUACCGUUUCAUUUAGAAA--AUAUUGAAUUACUUCAAAUUACUAAUGAAGGUUUCAAACCAUAA ...(((((((((((....((((....------((........))....)))).(((((((.((..(--((.(((((....)))))))).))))))))).))))))))))).. ( -22.70) >DroEre_CAF1 40192 97 - 1 UAAAUGGUUUGAAAACAGGGAAUCCA------UGGGUUUUCUGCCCUUUUUCGUUUGAAUUAAAAAGAAAAUUUCAUUAUUCCAA---UA--AAAAAACGA----AUAAUAA ....(((..(((((.(((..((((..------..))))..)))....(((((.(((......))).)))))))))).....))).---..--.........----....... ( -17.10) >DroYak_CAF1 35523 110 - 1 UCAAUGGUUGGAAAACAGGGAAUCCAAGUGUUUGUGUUUUCUGCCUUUUUCCGAUUGAUUUAAAAGAGAAAACAGAUUAUUCCAAGUCUC--AAAAAGGUAUUAGGUAAUAA .....(((((((((((((..((..(((....)))..))..)))...)))))))))).........((((.....((....))....))))--.................... ( -20.20) >consensus UAAAUGGUUUGAAAACAGGGAAUCCA______UGUAUUUUCUCCCUUUUACCGUUUCAUUUAAAAA__AAAUUAAAUUACUCCAA_UUUCUAAUGAAGGUUUCAAACAAUAA .(((((((........(((((((.(........).))))))).......)))))))........................................................ ( -3.72 = -4.96 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:28 2006