Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,321,064 – 5,321,164 |
Length | 100 |
Max. P | 0.514303 |
Location | 5,321,064 – 5,321,164 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -17.10 |
Consensus MFE | -12.03 |
Energy contribution | -12.37 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.11 |
Mean z-score | -2.38 |
Structure conservation index | 0.70 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5321064 100 - 20766785 AUUUGCGCACUUACACU----UACAUAUGUAUGUAUGCACACACGCACCCACACUCGCACUUACACUGUGACAAACUGCGCACACCAACAUUCUCGCAUUUAUC ...((((((........----.......((.((..(((......)))..)).))(((((.......))))).....))))))...................... ( -16.70) >DroSec_CAF1 38087 104 - 1 ACUCGCGCACUCACACUUACUUACAUAUGUAUGUAUGUACACACGCACCCAAACUCGCACUCACACUGUGACAGACUGCAAACACCAACACUGUCGCAUUUAUC ....(((.....(((..(((.(((....))).)))))).....)))....................((((((((................))))))))...... ( -16.29) >DroSim_CAF1 44326 104 - 1 ACUCGCGCACUCACACUUACUUACAUAUGUAUGUAUGUACACACGCACCCACACUCGCACUCACACUGAGACAGACUGCGCACACCAACACUGUCGCAUUUAUC ....(((((.((.........(((((((....)))))))....................(((.....)))...)).)))))....................... ( -18.30) >consensus ACUCGCGCACUCACACUUACUUACAUAUGUAUGUAUGUACACACGCACCCACACUCGCACUCACACUGUGACAGACUGCGCACACCAACACUGUCGCAUUUAUC ....(((((.((................((.((..(((......)))..)).))(((((.......)))))..)).)))))....................... (-12.03 = -12.37 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:27 2006