Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,316,822 – 5,316,914 |
Length | 92 |
Max. P | 0.873472 |
Location | 5,316,822 – 5,316,914 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 77.33 |
Mean single sequence MFE | -16.05 |
Consensus MFE | -8.40 |
Energy contribution | -8.48 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -2.14 |
Structure conservation index | 0.52 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5316822 92 - 20766785 --------AUCU-UGUGAUAAACAUACAUCUAAACAUAAUCCAUUGUGAAGUACUGGGAGUGCUUCAAACAAGUUGCUUACCUAACAAAAAGCGUCAA-GGA --------.(((-(.((((.(((..........(((........)))(((((((.....)))))))......)))((((..........)))))))))-))) ( -16.00) >DroVir_CAF1 36408 98 - 1 AGCCGAUUUCCC-GGCUAUAAACAUACAUCUAAACAUAAGCCGAUGUGAAGUACUAACAAUACUUCAAACAAUUUGCUUACCUACCCGAAAAAAA---AUAA (((((......)-))))...................(((((.(((.(((((((.......)))))))....))).)))))...............---.... ( -19.50) >DroGri_CAF1 32361 95 - 1 AGCCGACUACGUCUGCUAUAAACAUACAUCUAAACAUAAGCCAAUCUGAAGUACUAACAAUACUUCAAACAAUUUGCUUACCUACCCAAAAAGUA------- (((.(((...))).)))...................(((((.(((.(((((((.......)))))))....))).)))))...............------- ( -13.60) >DroEre_CAF1 34621 92 - 1 --------AUCU-UGUGAUAAACAUACAUCUAAACAUAAUCCAUUGUGAAGUACUGGGAGUGCUUCAAACAAGUUGCUUACCUAACAAAAAGCGCCAA-GGA --------.(((-((.....(((..........(((........)))(((((((.....)))))))......)))((((..........))))..)))-)). ( -15.70) >DroYak_CAF1 29672 92 - 1 --------AUCU-GGUGAUAAACAUACAUCUAAACAUAAUCCAUUGUGAAGUACUGGGAGUGCUUCAAACAAGUUGCUUACCUAACAAAAAGCGCCAA-GGA --------...(-((((.............................((((((((.....)))))))).....((((......))))......))))).-... ( -17.00) >DroAna_CAF1 29770 85 - 1 --------AUCU-GGCGAUAAACAUACAUCUAAACAUAAUCCAUUGUGAAGUACUAAAAGUACUUCAAACAAGUUGCUUACCUAAGAAAAACC--------A --------....-((((((..............(((........)))(((((((.....)))))))......))))))...............--------. ( -14.50) >consensus ________AUCU_GGCGAUAAACAUACAUCUAAACAUAAUCCAUUGUGAAGUACUAAGAGUACUUCAAACAAGUUGCUUACCUAACAAAAAGCGA____GGA ..............................................((((((((.....))))))))................................... ( -8.40 = -8.48 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:25 2006