Locus 1375

Sequence ID 2R_DroMel_CAF1
Location 5,315,573 – 5,315,663
Length 90
Max. P 0.734992
window2369

overview

Window 9

Location 5,315,573 – 5,315,663
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 84.70
Mean single sequence MFE -18.18
Consensus MFE -11.40
Energy contribution -12.24
Covariance contribution 0.84
Combinations/Pair 1.06
Mean z-score -2.27
Structure conservation index 0.63
SVM decision value 0.43
SVM RNA-class probability 0.734992
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5315573 90 + 20766785
AAAUCAUUUACUUAACACAAGCCACAAAAGACUGACUAUUCGAAAACACCGAUAAGUGGGCGAUAACCACUUCGGUGGUUUCAUAUUGAA
.........................................((((.((((((..(((((.......))))))))))).))))........ ( -19.90)
>DroSec_CAF1 32493 86 + 1
AAAUCAUUUACUUAACACAAGCCACAAAAGA----CUAUUCGACAACAGCGAAAAGUGGCCGAUAACCACUUCGGUGGUUUCGUAUUAAA
...........((((.((..(((((......----...((((.(....)))))..))))).((.((((((....)))))))))).)))). ( -19.70)
>DroSim_CAF1 38670 86 + 1
AAAUCAUUUACUUAACACAAGCCACAAAAGA----CUAUUCGACAACACCGAAAAGUGGGCGAUAACCACUUCGGUGGUUUCGUAUUAAA
...........((((.((..(((.(....)(----((.((((.......)))).))).)))((.((((((....)))))))))).)))). ( -20.50)
>DroEre_CAF1 33384 78 + 1
AAAACAUUUACUUAACACAAGCCACAAAAGA------------CUUAGCCGAAAAGUGAGCGAUAAGCACUUCGGUGGUUUCUUAUUGAG
..........(((((...(((((((..((((------------(((.......))))..((.....)).)))..)))))))....))))) ( -15.00)
>DroYak_CAF1 28398 86 + 1
GAAUCAUUUACUUAACACAAACCACAAAAGA----CAACUCGACUACACCGAAAAGGAGGCGAUAACCACUUCGGUGGUUUCUUAUUGAA
........................(((((((----....(((....(.((.....)).).))).((((((....)))))))))).))).. ( -15.80)
>consensus
AAAUCAUUUACUUAACACAAGCCACAAAAGA____CUAUUCGACAACACCGAAAAGUGGGCGAUAACCACUUCGGUGGUUUCGUAUUGAA
..................(((((((....((........))........(((..(((((.......)))))))))))))))......... (-11.40 = -12.24 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:24 2006