| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,315,232 – 5,315,337 |
| Length | 105 |
| Max. P | 0.509957 |
| Location | 5,315,232 – 5,315,337 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 83.50 |
| Mean single sequence MFE | -24.06 |
| Consensus MFE | -16.37 |
| Energy contribution | -16.73 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509957 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5315232 105 + 20766785 CUUUCAGCGGAAGCACUUUUUGCGUCAUCACUCAAUUUAUCAUCUGGCGUGGAAGGACUGAAAUAAAAUGUUUGCCCAUUUUAUUUUUCGU---UUUUUUUUUUUU------GG ......((....)).(((((..(((((.................)))))..)))))...(((((((((((......)))))))))))....---............------.. ( -23.83) >DroSec_CAF1 32153 103 + 1 CUUUCAGCGGAAGCACUUUUUGCGUCAUCACUCAAUUUAUCAUCUGGCGGGGAAGGACUGAAAUAAAAUGUUUUCCCAUUUUAUUUUUCGU---CUUUU--UUGGC------GG ......((....))................................((.(((((((((.(((((((((((......)))))))))))..))---)))))--)).))------.. ( -26.00) >DroSim_CAF1 38330 103 + 1 CUUUCAGCGGAAGCACUUUUUGCGUCAUCACUCAAUUUAUCAUCUGGCGUGGAAGGACUGAAAUAAAAUGUUUUCCCAUUUUAUUUUUCGU---CUUUU--UUGGC------GG ......((....)).(((((..(((((.................)))))..)))))...(((((((((((......))))))))))).(((---(....--..)))------). ( -28.23) >DroEre_CAF1 33057 109 + 1 CUUUCAGCAGGAGCACUUUUUGCGUCAUCACUCAAUUUAUCAUCCGGCGUGGAAGGACUGAAAUGAAAUGUUUUCGCAUUUUAUUUUUCGG---CUUUU--UUGCCUUUUUUGG ((((((((.(((.......(((.((....)).))).......))).)).))))))((..((((((((((((....))))))))))))))((---(....--..)))........ ( -27.04) >DroYak_CAF1 28057 103 + 1 CUUUCAGCAGGGACCCUUUUUGCGUCAUCACUCAAUUUAUCAUCUGGCGUGGAAGGACUGAAAUGAAAUGUUUUCGUAUUUUAUUUUUCGG---CUUUU--UUGCC------AG ......(((((((...)))))))....................((((((.((((((.(((((((((((((......))))))))..)))))---)))))--)))))------)) ( -23.50) >DroAna_CAF1 28271 104 + 1 CCACCAGCAGUUAUAUUUGUUCCGUCAUCACUCAAUUUAUCAUCUAGCGAGGGACGAAAGAAAUAAAAUGCUUUCCCAUUUUAUUUUCCCUGAAUUUUU--UUGUC-------- .......(((.....((((((((.((......................)))))))))).(((((((((((......)))))))))))..))).......--.....-------- ( -15.75) >consensus CUUUCAGCAGAAGCACUUUUUGCGUCAUCACUCAAUUUAUCAUCUGGCGUGGAAGGACUGAAAUAAAAUGUUUUCCCAUUUUAUUUUUCGU___CUUUU__UUGCC______GG ......((....)).(((((..(((((.................)))))..)))))...(((((((((((......)))))))))))........................... (-16.37 = -16.73 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:23 2006